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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTGGGGGCTGGTCCAGTTCCAGGTCTCCTTCTACCAGAAATCTTTCCTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttcttctgctgtttcctattataaattttcttcggcagtttatgttcaagggttttgtttgattctataatgttcctggatggttgaatcaaga...

Basic information

species Glycine max
transcript GLYMA09G32510.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G32510.1 (Glycine max), 5'ss of exon 13
lower sequence: AT1G67300.1 (Arabidopsis thaliana), 5'ss of exon 13
TGCTCTGGGGGCTGGTCCAGTTCCAGGTCTCCTTCTACCAGAAATCTTTCCTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttcttctgctgtttcctattataaattttcttcggcagtttatgttcaagggttttgtttgattctataatgttcctggatggttgaatcaaga
 ||  | || ||||||||||| |||||| | || || || || ||||| || |||||||| ||||| ||||| |||||  |||| ||||| |||||||||||||   |  |   ||  ||  | |||| |   ||     ||  |||   | | | ||||   |   ||| |  ||| ||  ||||  |           
CGCCTTAGGAGCTGGTCCAGTACCAGGTTTACTCCTCCCTGAGATCTTCCCAAGTCGAATCAGAGCAAAAGCGATGGCTTTCTGCATGTCTGTGCATTGGgtaacaatagtaaactcgttgattttatcatcgtt-----gcgttttcgttcctaaggttgcttaacattgttgaatcttgttggacag-----------

upper sequence: GLYMA09G32510.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv11s0016g03660.t01 (Vitis vinifera), 5'ss of exon 13
TGCTCTGGGGGCTGGTCCAGTTCCAGGTCTCCTTCTACCAGAAATCTTTCCTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttcttctgctgtttcctattataaattttcttcggcagtttatgttcaagggttttgtttgattcta--taatgttcctggatggttgaatcaaga
||||||||||||||| |||||||||||||| || ||||||||||| || || |  |||||||| || ||||| ||||||||||||||||| ||||||||||||||  |    |||   ||  | | | |  |||| ||      |    || |     | || | ||| |  |  | |   ||||||   ||   |      
TGCTCTGGGGGCTGGCCCAGTTCCAGGTCTTCTCCTACCAGAAATTTTCCCAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGGgtaatacttggttgcatgtttttttaaaattttttttttcctcatcctcgtcctttattcttctgtgagttgaattcaaaatcctggcatgtgatacttt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286822|gb|BI470713.1|BI470713
EST:     CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT