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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAATCAAGGCAATCAAAGTGAAGGTACCAGATTCAAAGGAAGAATTCTTTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggataagttttattttcaaaacatttcaaagttatagttatttcttaacttgtattgtgcttacatcatcatgcatgagaattaatagaatgac...

Basic information

species Glycine max
transcript GLYMA09G31980.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G31980.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os01g52170.1 (Oryza sativa), 5'ss of exon 13
ATCAATCAAGGCAATCAAAGTGAAGGTACCAGATTCAAAGGAAGAATTCTTTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggataagttttattttcaa-----aacatttcaaagttatagttatttcttaa---cttgtattgtgcttaca-tcatcatgcatgagaattaatagaatgac------------------------------------------------------------------
|||||| |  ||||||  |||||| |||||||||||| | ||||| |||||  ||||||| |||||||| ||| ||||||| || |||||||||||||||||  ||  |    ||     || ||     |  |||  ||   |    |    |   ||   | ||||  ||||||| | |  |||   |  | |     |||  ||                                                                    
ATCAATTAGAGCAATCCGAGTGAAAGTACCAGATTCAGATGAAGAGTTCTTGTTGCATCCAGCAACAGTCAGAAGGAATGACCGATCTGCTCAAAGTGTGgtgggtataccttttcgccgtttaatgtgtattattctaacactggcatcgacttcaaatggcgtgtacagtgcttataattttcagaaactaaatcatgtagtctgtattttcagaaaccaatattttcacagttgcccttgttttgcacaaactaagtagttcttgtctgcag

upper sequence: GLYMA09G31980.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G129208_T01 (Zea mays), 5'ss of exon 12
ATCAATCAAGGCAATCAAAGTGAAGGTACCAGATTCAAAGGAAGAATTCTTTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggataagttttattttcaaaacatttcaaagttatagttatttcttaacttgtattgtgcttacatcatcatgcatgagaattaatagaatgac-
||| || || ||||||| |||||| || ||||||||| | ||||| ||||| |||||||| |||||||| ||||||||||| || || |||||||| ||||| |||  ||| | ||| |   ||     | |    | ||||  |  |||| |  |    |  |    |   ||      | | |  || ||   || |  
ATCCATTAAAGCAATCAGAGTGAAAGTGCCAGATTCAGACGAAGAGTTCTTGCTGCATCCAGCAACAGTTAGACGGAATGACCGATCCGCTCAAAGCGTGgtgtgtatatatgcttt-tcagcattcagtatgtgggatatatgtggttctaacatcagttcttaaggatggcaagtcaaaagtgtcttcatgtcattaaa

upper sequence: GLYMA09G31980.1 (Glycine max), 5'ss of exon 13
lower sequence: AT3G24430.1 (Arabidopsis thaliana), 5'ss of exon 12
ATCAATCAAGGCAATCAAAGTGAAGGTACCAGATTCAAAGGAAGAATTCTTTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggataagttttattttcaaaacatttcaaagttatagttatttcttaa-cttgtattgtg--cttacatcatca-tgcatgagaattaatagaatgac
 |   |||||||||| | ||||||||||||| | ||| | ||||| ||||| ||||| |||||||| || ||| | |||||| | ||||| ||||||||||||||   | |  ||  |  |   || |  ||     ||| || |  || | || |||  |    |   | | |   ||| ||  ||    ||  |  ||    
GTATCTCAAGGCAATTAGAGTGAAGGTACCAAACTCAGACGAAGAGTTCTTACTGCACCCTGCAACCGTCAGAAGAAATGATAGATCTGCACAAAGTGTGgtatg-aaagatattcaacctgagaatctgtttcttcttaaagcttcttttaaaacttaaaacaagaattcaaagtgtcaatgtttggatctttgttaaacag-

upper sequence: GLYMA09G31980.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv11s0016g04250.t01 (Vitis vinifera), 5'ss of exon 12
ATCAATCAAGGCAATCAAAGTGAAGGTACCAGATTCAAAGGAAGAATTCTTTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggataagttttattttcaaaacatttcaaagttatagttatttcttaacttgtat-----tgtgcttacatcatcatgcatgagaattaatagaatgac-
||  ||||| ||||||| |||||| |||||||||||| | ||||| ||| ||||||||||||| || || |||||||||||||| ||||| |||||||||||||||||   | |||| || |||| | |||||   || | |||| ||  |  |    ||      |||| | |  |    ||  ||  |||| ||    || |  
ATTTATCAAAGCAATCAGAGTGAAAGTACCAGATTCAGAAGAAGAGTTCCTTCTGCATCCTGCTACTGTAAGACGGAATGATCGATCTGCCCAAAGTGTGgtatgtggg-gattttttttctcaaca-atttc---gtaaaagttcttcatggaaccatagaaacatgtgatgaggt-gctatttattggaatcaagtttatcatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332939|gb|FK025036.1|FK025036
EST:     TTCTGCATCCTGCAACAGTGAGACGGAATGATCGTTCTGCTCAAAGTGTG                         GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
EST: gi|22524615|gb|BU083426.1|BU083426
EST:     TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTG                         GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
EST: gi|7283893|gb|AW596495.1|AW596495
EST:     TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTG                         GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
EST: gi|23052872|gb|BU577363.1|BU577363
EST:     TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTG                         GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
EST: gi|22523020|gb|BU081831.1|BU081831
EST:     TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTG                         GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
EST: gi|120530612|gb|EH258745.1|EH258745
EST:     TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTG                         GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
EST: gi|192315738|gb|FK011206.1|FK011206
EST:     TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTG                         GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
EST: gi|31459846|gb|CD401874.1|CD401874
EST:     TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTG                         GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
EST: gi|192308964|gb|FK001740.1|FK001740
EST:     TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTG                         GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT