Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAGCATCTTCTTCCATTGCTTATGCCCCTGCTGACTGCTCCACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatttttttttaaataattcttaaccccctcattttttttatttattttctgtctttctcattgtccttgatctctgacaaacttctcttttttttttttttttaaaaaaaaaactgtgttctgtatag

Basic information

species Glycine max
transcript GLYMA09G00470.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G059893_T01 (Zea mays), 5'ss of exon 1
CTGAGCATCTTCTTCCATTGCTTATGCCCCTGCTGACTGCTCCACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaattttt-ttttaaataattcttaac---cccctcattttttttatttattttctgtctttctcattgtccttgatctctgacaaacttctcttttttttttttttttaaaaaaaaaactgtgttctgtatag
                                       | |  ||| ||||||| ||||| |||||||| |||||||| ||||||||||| ||      |||   ||| |  |  ||   |||  ||    || ||| | | |  | | |  | ||   | | ||                                                                     
---------------------------------------CACATCAACTGAATGTACAACAATTTGCCAAGTATATGCTATTTGTCAAGGACATTACAAGgtatcatttatcctgcattgctctctacgtgtccatcaatatgtcaactaaactactacgtatttctacag----------------------------------------------------------------

upper sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 13
CTGAGCATCTTCTTCCATTGCTTATGCCCCTGCTGACTGCTCCACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaat-ttttttttaaataattct--taaccccctcattttttttatttattttctgtctttctcattgtccttgatctctgacaaacttctcttttttttttttttttaaaaaaaaaactgtgttctgtatag
| ||  || |  ||||  |  |  | ||  | || || || |  ||| ||||||| ||||| |||||||| |||||||| ||||||||||| ||      ||| | ||| |  |  ||   |||  |    || | | | | |  | | |  | ||  || | ||                                                                     
CGGAATATGTGATTCCTCTCATCTTCCCATTACTCACAGCACATCAACTGAATGTACAACAATTTGCCAAGTATATGCTATTTGTCAAGGACATTACAAGgtattgtttatcctgcattgctctcctgtgtccattaatatgtcaactaaactactacctatttctacag----------------------------------------------------------------

upper sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 13
lower sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 13
CTGAGCATCTTCTTCCATTGCTTATGCCCCTGCTGACTGCTCCACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatttttttttaaataattcttaaccccctcattttttttatttattttctgtctttctcattgtccttgatctctgacaaacttctcttttttttttttttttaaaaaaaaaactgtgttctgtatag
| || ||| | ||| |  || | ||||| || || ||||| | |||| |||| || ||||||||||||||||||||||| |||||||||||||| |||  ||     | || | |  |    | |   |  |    |  | | || |  | |   |     || |||  ||| ||| |       ||    ||  | | || |   |                        
CAGAACATGTGCTTACCCTGATGATGCCGCTTCTCACTGCCCAACAACTGAACGTCCAACAGTTTGCCAAATATATGCTATTTGTCAAGGATATTCTCAGgtgtgcatcttgttatcag---tcagtacttttgaatagtgttttcacgtccgtaccacaacagtgttgttg-tctttattgtgatttgtattcatctattgtaacag-----------------------

upper sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 13
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 13
CTGAGCATCTTCTTCCATTGCTTATGCCCCTGCTGACTGCTCCACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatttttttttaaataattcttaaccccctcattttttttatttattttctgtctttctcattgtccttgatctctgacaaacttctcttttttttttttttttaaaaaaaaaactgtgttctgtatag
| || ||  | |||||  || |||| || || || ||||| | |||||||||||| |||||||||||||||||||| || |||||||| ||||| |||  |||   |   |   |  ||| ||   |    ||    || |||||    || |  ||   | | |||  |   | | |   | |  |   || | | |  | |  | |   || |                
CAGAACACGTACTTCCCCTGATTATACCACTTCTCACTGCCCAACAATTGAATGTCCAACAGTTTGCCAAATATATTCTATTTGTCAAAGATATTCTCAGgta---tacctccgaccaatcctgtcctgtttccaagttcttattccccttataactgcat-actgttgtaattgttttcaacatctggtttgtctatcctctggtcactgaacag---------------

upper sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 13
CTGAGCATCTTCTTCCATTGCTTATGCCCCTGCTGACTGCTCCACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaattt---ttttttaaataattcttaaccccctcattttttttatttattttctgtctttctcattgtcctt-gatctctgacaaacttctcttttttttttttttttaaaaaaaaaactgtgttctgtatag
|||||||| | |||||| | || |  || || || | ||||| |||||||||||||||||||||||| || || ||||||||||| |||||||| |||  ||| | |    |  || | |    || ||  | |  || || | |   | | || |    |      ||| ||  || | | || || | |     | |||   ||  ||          |||| || |  | ||
CTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCTTTGTTAAGGATATCCTCAGgtattataaactgattgactgtccctaaattctcctatcttctctgcatgtgttttcatctgaatgctgtgctcagaccaccgaaaagccttgaaatgtttcccttcctttttttgttg-ctgttttata-acag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588196|gb|AW703997.1|AW703997
EST:     AAGGATATGCTCCA                         CAAAATAGAAGAGAAACGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGA
genomic: AAGGATATGCTCCAgtaatttttt ... ttctgtatagCAAAATAGAAGAGAAACGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGA
EST: gi|26057585|gb|CA800499.1|CA800499
EST:     AATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCA                         CAAAATAGAAGAGAAACGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGA
genomic: AATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatttttt ... ttctgtatagCAAAATAGAAGAGAAACGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGA