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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGGATGCTTCTGCAATCCAGGTGCATGTGCAAAATACCTTGGCTTGTCTCATTTGGATCTTATTTCAAATACTGAGgtatttataccatcttcttacgatgattggtttatctatgttatgagtgtatattgtataacgtaacaaatgatttttatttatttatttgtttttgtatttag

Basic information

species Glycine max
transcript GLYMA09G00460.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00460.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv19s0027g01090.t01 (Vitis vinifera), 5'ss of exon 13
ACAGGATGCTTCTGCAATCCAGGTGCATGTGCAAAATACCTTGGCTTGTCTCATTTGGATCTTATTTCAAATACTGAGgtat--------ttataccatcttcttacgatgattg---gtttatctatgttatgagtgtatattgtataacgtaacaaat----gatttttatttatttatttgtttttgtatttag
||||||||||| |||||||| ||||| ||||||||||| || ||||||||||| |  |||||  |||| |||| ||||||||         | | |    ||||| |  | |||    ||  ||  |   |||   | | | |  | |   ||||  | |    |||  |||   | |       |||||  |||||
ACAGGATGCTTTTGCAATCCTGGTGCTTGTGCAAAATATCTGGGCTTGTCTCACTCTGATCTGCTTTCCAATATTGAGgtatggtgcattctttgctgatttctttcagttattatatgtgaatgcaatgtattcatttgtttgcttttctgtaagtattcctagatccttaacaactgtgcctcttttgagtttag

upper sequence: GLYMA09G00460.2 (Glycine max), 5'ss of exon 13
lower sequence: PP1S23_133V6.1 (Physcomitrella patens), 5'ss of exon 13
ACAGGATGCTTCTGCAATCCAGGTGCATGTGCAAAATACCTTGGCTTGTCTCATTTGGATCTTATTTCAAATACTGAGgtatttataccatcttcttacgatgattggtttatctatgttatgagtgtatattgt--ataacgtaacaaatgatttttatttatttatttgtttttgtatttag-------------------------------------------------------------------
|| || || ||||||||||||||||| |||||||||||| | ||  | || ||   ||| ||| |  | |||  |||||||   |||    |    ||  || | |  | ||   |    || |||||    | |  | |  ||   |        |      ||  |      |  ||||  |                                                                   
ACTGGCTGTTTCTGCAATCCAGGTGCTTGTGCAAAATACTTGGGGCTCTCACAAGAGGACCTTGTGGCTAATTTTGAGgtac--ataagtgccgagtattataagtcttctagtgaaaacataagtgttgccttttgacagtgttctaggaaggcatggaagtttagtccacagtaatattctggtagtgttcacaacgcattccaaactgatgttcttgtaatgacatgaattctacactgatgatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402728|gb|EV272541.1|EV272541
EST:     GTGCAAAATACCTTGGCTTGTCTCATTTGGATCTTATTTCAAATACTGAG                         GCTGGTCACGTTTGTTGGGATGATCTTGATATAATCAATGGTAAACCTGTT
genomic: GTGCAAAATACCTTGGCTTGTCTCATTTGGATCTTATTTCAAATACTGAGgtatttatac ... ttgtatttagGCTGGTCACGTTTGTTGGGATGATCTTGATATAATCAATGGTAAACCTGTT
EST: gi|7147103|gb|AW509025.1|AW509025
EST:     GTGCAAAATACCTTGGCTTGTCTCATTTGGATCTTATTTCAAATACTGAG                         GCTGGTCACGTNTGTTGGGATGATCTTGATATTATCAATGGTAAACCTGTT
genomic: GTGCAAAATACCTTGGCTTGTCTCATTTGGATCTTATTTCAAATACTGAGgtatttatac ... ttgtatttagGCTGGTCACGTTTGTTGGGATGATCTTGATATAATCAATGGTAAACCTGTT