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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCATGATGCTGCCAAACCTCGGGAAGAACTTGATTTTCTTTTTATGCAATTACAAGACACGGCTCGGAGAGTTGCCCAACTTCAGCTGGAGTGCAAGgtaatgaccaaatgccaattcattgcatatctggcatctaactgcacatattgtgttccaagttttatttgttaaaatctaggtcaattagtgtatcatc...

Basic information

species Glycine max
transcript GLYMA08G47700.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31467642|gb|CD409670.1|CD409670
EST:     AATTACAAGACACGGCTCGGAGAGTTGCCCAACTTCAGCTGGAGTGCAAG                         GTGGAAATTGACGTTGAGAGTTTTGTTAAGTCGTTTAGGCCTGACATTATG
genomic: AATTACAAGACACGGCTCGGAGAGTTGCCCAACTTCAGCTGGAGTGCAAGgtaatgacca ... aaaaaaacagGTGGAAATTGACGTTGAGAGTTTTGTTAAGTCGTTTAGGCCTGACATTATG
EST: gi|192296445|gb|FG989105.1|FG989105
EST:     AATTACAAGACACGGCTCGGAGAGTTGCCCAACTTCAGCTGGAGTGCAAG                         GTGGAAATTGACGTTGAGAGTTTTGTTAAGTCGTTTAGGCCTGACATTATG
genomic: AATTACAAGACACGGCTCGGAGAGTTGCCCAACTTCAGCTGGAGTGCAAGgtaatgacca ... aaaaaaacagGTGGAAATTGACGTTGAGAGTTTTGTTAAGTCGTTTAGGCCTGACATTATG
EST: gi|22929797|gb|BU546936.1|BU546936
EST:     AATTACAAGACACGNCTCGGAGAGTTGCCCAACTTCAGCTGGAGTGCAAG                         GTGGAAATTGACGTTGAGAGTTTTGTTAAGTCGTTTAGGCCTGACATTATG
genomic: AATTACAAGACACGGCTCGGAGAGTTGCCCAACTTCAGCTGGAGTGCAAGgtaatgacca ... aaaaaaacagGTGGAAATTGACGTTGAGAGTTTTGTTAAGTCGTTTAGGCCTGACATTATG
EST: gi|209706643|gb|BW676152.1|BW676152
EST:     AATTACAAGACACGGCTCGGAGAGTTGCCCAACTTCAGCTGGAGTGCAAG                         GTGGAAATTGACGTTGAGAGTTTTGTTAAGTCGTTTAGGCCTGACATTATG
genomic: AATTACAAGACACGGCTCGGAGAGTTGCCCAACTTCAGCTGGAGTGCAAGgtaatgacca ... aaaaaaacagGTGGAAATTGACGTTGAGAGTTTTGTTAAGTCGTTTAGGCCTGACATTATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTCATGATGCTGCCAAACCTCGGGAAGAACTTGATTTTCTTTTTATGCAATTACAAGACACGGCTCGGAGAGTTGCCCAACTTCAGCTGGAGTGCAAGgtaatgaccaaatgccaattcattgcatatctggcatctaactgcacatattgtgttccaagttttatttgttaaaatctaggtcaattagtgtatcatc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA