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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGGCAGGGAGTTCCGAGAACGGCTTTTGGGACGATGGGGAATAGTTGATGTCAATGACTGTTGTAGTTGTGCAACATATTTGgtatatttttatttttaatttttttctaatatttgtggctgatggatgtggtataagagtggttatatgatataatctcttatgtag

Basic information

species Glycine max
transcript GLYMA08G42730.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G42730.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv18s0001g11140.t01 (Vitis vinifera), 5'ss of exon 13
GTTATGGCAGGGAGTTCCGAGAACGGCTTTTGGGACGATGGGGAATAGTTGATGTCAATGACTGTTGTAGTTGTGCAACATATTTGgtatatttttatttttaatttttttctaatatttgtggctgatggatgtggtataagagtggttatatgatataatctcttatgtag
|||||||||| || |  ||||| ||||||||||| || |||||||| |||||||| ||||||||||| |||||||| | || ||||||| ||| |    |||| ||| |     ||     || || |  ||| | || ||| |    | |||  ||  |     || |||||
GTTATGGCAGAGAATATCGAGAGCGGCTTTTGGGCCGCTGGGGAATTGTTGATGTAAATGACTGTTGCAGTTGTGCTAGATTTTTGgta-attatc--ctttagtttgtgatggatgaacatg-ctaa--gatattgtttaaaac--ataataatattcatatggttctgtag

upper sequence: GLYMA08G42730.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv18s0001g11150.t01 (Vitis vinifera), 5'ss of exon 13
GTTATGGCAGGGAGTTCCGAGAACGGCTTTTGGGACGATGGGGAATAGTTGATGTCAATGACTGTTGTAGTTGTGCAACATATTTGgtatatttttatttttaatttttttcta-atatttgtggctgatggatgtggtataagagtggttatatg-atataatctcttatgtag
|||||||||| || || || ||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||| || | || |||||||     ||||||  || ||| |  |  ||   | ||     ||    |  |  ||    ||| ||||  || | || |||       
GTTATGGCAGAGAATTTCGTGAACGGCTTTTAGGACGCTGGGGAATTGTTGATGTCAACGACTGTTGCAGTTGCGCTAAATTTTTGgtaa----ttatttccaagtttgtaatggatgactatgttaagtgatcat--tcaaatcacggtaatattcatttgatgtctag-----