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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATATCTGGGCCTGTCCTCCATTAAAGGGAGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACACCAAAATCCGATAAGCTACGTGAATGgtgagcctaatagcttcagtatagacaaaatgaaaaaaagttgtctatttattttccttgtacaatgtgattaggttatttatctctaacttcagcatttgtaaacatgtttcttcag

Basic information

species Glycine max
transcript GLYMA08G24290.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24290.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os06g49130.2 (Oryza sativa), 5'ss of exon 10
GCTATATCTGGGCCTGTCCTCCATTAAAGGGAGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACACCAAAATCCGATAAGCTACGTGAATGgtgagcctaatagcttcagtatagacaaaatgaaaaaaagttgtctatttattttccttgtacaa-tgtgattaggttatttatctctaacttcagcatttgtaaacatgtttcttcag
| ||||| ||||| || |||||  | || || |||||||| ||||| |||||||||||||| |||||||| |||||||| || ||||| || ||| | |||| || | | ||| ||  | ||  |              ||||| |||   | ||  | ||     ||   ||  |   |    ||||  | |  |||     |||   ||||||    
GTTATATATGGGCTTGCCCTCCTGTTAAAGGTGAAGATTACATTTTGTATTGCCATCCAGAGATTCAGAAGACACCAAAGTCTGATAAACTGCGTCAGTGgtaagacca-tagatt-ggcatctat-------------gttgt-tatccttgttaatagtgtggctgcatttgtggggtaatgctctgcccttggcagcaaaaaaatggtttctg---

upper sequence: GLYMA08G24290.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os02g04490.1 (Oryza sativa), 5'ss of exon 11
GCTATATCTGGGCCTGTCCTCCATTAAAGGGAGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACACCAAAATCCGATAAGCTACGTGAATGgtgagcctaatagcttcagtatagacaaaatgaaaaaaagttgtctatttattttccttgtacaatgtgattaggttatttatctctaacttcagcatttgtaaacatgtttcttcag
| || || ||||| || || || ||||| || |||||||| ||||| || |||||||| || |||||||| || ||||||||||| ||  |  | || |||| || |   |     || |   |  |   ||         |  || ||   | | || ||  |   |||||   | || || || ||   ||||                       
GTTACATATGGGCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCCGACAAATTGAGGGAGTGgtaagacctttgttgacacttctgttactctg--------ctcacttttagctcttctagttta-catgatttc-tgatgta-ctttacactcag-----------------------

upper sequence: GLYMA08G24290.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G139977_T02 (Zea mays), 5'ss of exon 4
GCTATATCTGGGCCTGTCCTCCATTAAAGGGAGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACACCAAAATCCGATAAGCTACGTGAATGgtgagcctaatagcttcagtatagacaaaatgaaaaaaagttgtctatttattttccttgtacaatgtgattaggttatttatctctaacttcagcatttgtaaacatgtttcttcag
| || || ||||| ||||| || || ||||| |||||||| || |||||||||||||| || ||||| || || || ||||| ||||| || ||||| |||| |||||           || ||||| |||  |     ||||  | |  ||  |||    || | ||  | | ||  ||||   | |                              
GTTACATATGGGCTTGTCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGATAAACTGCGTGAGTGgtaagcct-----------tagagacacaattgatctt-gttgcttttagatcctcc----acca-gttctaatgtcttttacacccag-----------------------------

upper sequence: GLYMA08G24290.1 (Glycine max), 5'ss of exon 13
lower sequence: AT1G16710.1 (Arabidopsis thaliana), 5'ss of exon 11
GCTATATCTGGGCCTGTCCTCCATTAAAGGGAGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACACCAAAATCCGATAAGCTACGTGAATGgtgagcctaatagcttcagtatagacaaaatgaaaaaaagttgtctatttattttccttgtacaatgtgattaggttatttatctctaacttcagcatttgtaaacatgtttcttcag
|||| || ||||| ||||| ||| | ||||| || ||||||||  |||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||| || ||||| |  |   |   ||     |  | | |  ||   ||   |  | | ||  |   |   ||| |  |  |  |||  |    |||                       
GCTACATATGGGCTTGTCCACCACTGAAGGGTGAGGATTATATCCTATATTGCCATCCAGAAATTCAGAAAACACCAAAGTCTGATAAACTACGGGAATGgtcagtctaattgtctt--tggtgattttcttcatacagttttcgtaggaaaatcctttacatcctccaatttg-ctcctggtctaca----cag-----------------------

upper sequence: GLYMA08G24290.1 (Glycine max), 5'ss of exon 13
lower sequence: AT3G12980.1 (Arabidopsis thaliana), 5'ss of exon 11
GCTATATCTGGGCCTGTCCTCCATTAAAGGGAGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACACCAAAATCCGATAAGCTACGTGAATGgtgagcctaatagcttcagtatagacaaaatgaaaaaaagttgtctatttattttccttgtacaatgtgattaggttatttatctctaacttcagcatttgtaaacatgtttcttcag
||||||| ||||| || || ||  | ||||| |||||||||||||||||||||||||| |||||||||||||| |||||  | ||||| ||| | |||||||       || |    | |||| ||        ||         || || |||| |  ||  || | ||  |  ||   |||    |     |  | |      | |   | |||||
GCTATATATGGGCATGCCCCCCTCTTAAGGGTGAAGATTATATTTTATATTGCCATCCTGAAATTCAGAAAACGCCAAAGACTGATAAACTAAGGGAATGgt-------atgg----aatatatactttcctgtaa---------tacttgtttttcacgtgtaa-gagagaatattgcatataatgatgcataatact------ccttccttttcag

upper sequence: GLYMA08G24290.1 (Glycine max), 5'ss of exon 13
lower sequence: AT1G79000.1 (Arabidopsis thaliana), 5'ss of exon 12
GCTATATCTGGGCCTGTCCTCCATTAAAGGGAGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACACCAAAATCCGATAAGCTACGTGAATGgtgagcctaatagcttcagtatagacaaaatgaaaaaaagttgtctatttattttccttgtacaatgtgattaggttatttatct-ctaacttcagcatttgtaaacatgtttcttcag
|||| || ||||| ||||| ||  | ||||| || |||||||| |||||||| ||||||||||||||||| || |||||||| ||||| ||||| || |||| ||   | |  | |   |           | |  ||  | ||  | |   ||    || | ||     |||  | ||  | || |  || |    ||| | |               
GCTACATATGGGCTTGTCCGCCGCTGAAGGGCGAGGATTATATCTTATATTGTCATCCAGAAATTCAGAAGACGCCAAAATCTGATAAACTACGAGAGTGgtcagttcatttacctttttg----------ggatgaacttcgtaaact---ttcatatgaaaaagtcatttacatcatccaactgcccacgttgttattcgcag--------------

upper sequence: GLYMA08G24290.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 10
GCTATATCTGGGCCTGTCCTCCATTAAAGGGAGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACACCAAAATCCGATAAGCTACGTGAATGgtgagcctaat-agcttcagtatagacaaaatgaaaaaaagttgtctatttattttccttgtacaatgtgattagg--ttatttatctctaacttcagcatttgtaaacatgttt-cttcag
||||||| ||||| |||||||| || ||||| ||||| ||||| || ||||||||||| ||||||||||||||||||||||| ||||| ||  | ||||||||||  || | | | | || | | | ||  |  ||  |  ||     |||   || | || |  | ||  |||    |   | |||  |    |  |  |    |||  | | |  |||||
GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtgagagtagttatcgttagaaaatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcag