Sequence
atgc intronic sequence ATGC exonic sequenceGTATGGGATGCTGCTTCGGGTGCAAAGCAGTATACTTTTGAAGGTCATGAGGCTCCTGTTTATTCTGTCTGCCCACATTATAAAGAAAACATTCAGgtacaaattgacttctgtacctttgggattgttagttgagtttgttggcatgtttccttcagctgcattaatatatatgaatataatccctccccctcccaaaagttacttggccattttttttctggttggttttcttactgatggtcattgtcttgtgatgttgtag
Basic information
species | Glycine max |
transcript | GLYMA08G22910.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G22910.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 13
GTATGGGATGCTGCTTCGGGTGCAAAGCAGTATACTTTTGAAGGTCATGAGGCTCCTGTTTATTCTGTCTGCCCACATTATAAAGAAAACATTCAGgtacaaattgacttctgtacctttgggattgttagttgagtttgttggcatgtttccttcagctgcattaatatatatgaatataatccctccccctcccaaaagttacttggccattttttttctggttggttttcttactgatggtcattgtcttgtgatgttgtag
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GTGTGGGATGCCACTAATGGAACTAAACAGTATACTTTTGAAGGCCATGAGGATGCAGTTTATTCTGTCTGCCCCCACTATAAGGAGAATATTCAGgtaacaa----gtccattagctttgg--ctatt--ctaagtttgtcatgttttttcgccttcctgta--actactttcttctgtcatcccttggtc-ctgatgttctgtttgtgcttttatgcttcag-----------------------------------------
upper sequence: GLYMA08G22910.2 (Glycine max), 5'ss of exon 14
lower sequence: PP1S99_260V6.1 (Physcomitrella patens), 5'ss of exon 13
GTATGGGATGCTGCTTCGGGTGCAAAGCAGTATACTTTTGAAGGTCATGAGGCTCCTGTTTATTCTGTCTGCCCACATTATAAAGAAAACATTCAGgtacaa-attgacttctgtacctttgggattgttagttgagtttgttggcatgtttccttcagctgcattaa-tatatatgaatataatccctccccctcccaaaagttacttggccattttttttctggttggttttcttactgatggtcattgtcttgtgatgttgtag
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GTTTGGGATGCTGCAACAGGGCGGAAGCAGTATACTTTTGAAGGTCATGAAGCACCCGTGTACTCTGTTTGTCCACACCACAAGGAGAGCATTCAGgtgggacatttgtatcaatgctttc---ttctcttttttgctctcttagagtcatgtttgggtcttcgtaaggtgtgtgtgtgcgtgagttgctataatttca--------------------------------------------------------------------
upper sequence: GLYMA08G22910.2 (Glycine max), 5'ss of exon 14
lower sequence: EFJ17248 (Selaginella moellendorffii), 5'ss of exon 13
GTATGGGATGCTGCTTCGGGTGCAAAGCAGTATACTTTTGAAGGTCATGAGGCTCCTGTTTATTCTGTCTGCCCACATTATAAAGAAAACATTCAGgtacaaattgacttctgtacctttgggattgttagttgagtttgttggcatgtttccttcagctgcattaatatatatgaatataatccctccccctcccaaaagttacttggccattttttttctggttggttttcttactgatggtcattgtcttgtgatgttgtag
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GTTTGGGAAGCCATGACCGCTCGCAAGATTTATGTATTTGAAGGTCATGAGGCAGCAGTGTATTCTGTATGTCCACATCATAAAGAAAGCATACAGgtctgtatccattgccgttttctt-----tatta--tgggtttatggttat-tgctctgcag-----------------------------------------------------------------------------------------------------------
upper sequence: GLYMA08G22910.2 (Glycine max), 5'ss of exon 14
lower sequence: EFJ30926 (Selaginella moellendorffii), 5'ss of exon 13
GTATGGGATGCTGCTTCGGGTGCAAAGCAGTATACTTTTGAAGGTCATGAGGCTCCTGTTTATTCTGTCTGCCCACATTATAAAGAAAACATTCAGgtacaaattgacttctgtacctttgggattgttagttgagtttgttggcatgtttccttcagctgcattaatatatatgaatataatccctccccctcccaaaagttacttggccattttttttctggttggttttcttactgatggtcattgtcttgtgatgttgtag
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GTTTGGGAAGCCATGACCGCTCGCAAGATTTATGTATTTGAAGGTCATGAGGCAGCAGTGTATTCTGTATGTCCACATCATAAAGAAAGCATACAGgtctgtgtccattgccgttttctt-----tatta--tgggtttatggttat-tgctctgcag-----------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18848902|gb|BM568012.1|BM568012EST: ATGAGGCTCCTGTTTATTCTGTCTGCCCACATTATAAAGAAAACATTCAG TTCATCTTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGTTGTATGAC
genomic: ATGAGGCTCCTGTTTATTCTGTCTGCCCACATTATAAAGAAAACATTCAGgtacaaattg ... gatgttgtagTTCATCTTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGTTGTATGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATGGGATGCTGCTTCGGGTGCAAAGCAGTATACTTTTGAAGGTCATGAGGCTCCTGTTTATTCTGTCTGCCCACATTATAAAGAAAACATTCAGgtacaaattgacttctgtacctttgggattgttagttgagtttgttggcatgtttccttcagctgcattaatatatatgaatataatccctccccctcccaaaagttacttggccattttttttctggttggttttcttactgatggtcattgtcttgtgatgttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA