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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGGCGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTACGATTGGGTTGAGTGTAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtggcatcagctttctgcttttatttcttcttactgtttcttatttttgttaaatttttcttgtgtcag

Basic information

species Glycine max
transcript GLYMA08G22140.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 12
ATTTGGCGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTACGATTGGGTTGAGTGTAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtggcatcagctttctgcttttatttcttcttactgtttcttatttttgttaaatttttcttgtgtcag----------
 ||||| ||     | ||||||||||| || | |||||||||||||||||| || |||||||| |||||  | || || || || ||||| |||||||| || | | |  | || |  |    |  | |      |||    | |    | ||| |    ||  | ||||  ||||||| | |||           
TTTTGGTGGGGTATTGTTGGCAATGTGTTCTAGTGATTTCATCTGCTTTTATGACTGGGTTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgaat-caagtattattttttcttgggtggaaattttg---tatgtaaaatgtatgagtttactattaaccttttctt-tatcatgcatttatag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 14
ATTTGGCGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTACGATTGGGTTGAGTGTAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggt---------ggcatcagctttctgcttttatttcttcttactgtttcttatttttgttaaatttttcttgtgtcag------
|| ||| ||     |  | || || ||  ||||||||||||| || ||||| || ||||  ||||| |||||||| ||||| ||||| || ||||| ||||| |||  || | |  | |         |  | |     | || ||||| |  || || |  |  |     |    |  |||  ||||||| | |      
ATATGGGGGAGTATTGCTTGCTATATGTACAAATGATTTCATTTGTTTTTATGACTGGGCAGAGTGCAGGTTGATACGTCGAATTGACGTGAATGTAAAAgtgagtcgttacttttgcttcagcaatggatacccatcatgtgtttttactcttttttgccttaacgccactggaattgattactcttgtgcctggtgtag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 13
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 17
ATTTGGCGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTACGATTGGGTTGAGTGTAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcat----gaggtgg---catcagctttctgcttttatttcttcttactgtttcttatttttgttaaatttttcttgtgtcag-----------------------------------------------------------------------------------------------
 ||||| || ||  ||||| |||||||||||| |||||| || ||||| || |||||||  || |||||||||||| | || || ||||||| ||| |||||||||||||  ||    || || |   ||| || ||||| |    |  |  | |||  | ||    |||  || | |||||| |||    |                                                                                                
TTTTGGTGGGACGTTATTGACAATGTGCTCAAGTGATTTTATATGCTTCTATGATTGGGCGGAATGTAGGTTGATTAGGCGAATAGATGTTACTGTCAAAgtaagtgcttatataccagaagtagatccattag-tttctacaagaaaatagt-ttataggttacgttttcagtaatatttttattggagaaatacaaaagagttccttatctgaaatttaaacgcaaaagcagattggtactgctcgcttattcacttttaacgtttttgtttattcaatgtttcag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 13
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 13
ATTTGGCGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTACGATTGGGTTGAGTGTAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgta----agt--gcttgcatgaggtggc-atcagctttctgcttttatttcttcttactgtttcttatttttgttaaatttttctt-gtgtcag-------------------------------------------------------
 ||||| || ||  | || || ||||| |||| |||||||||||||||||| ||||||| ||| |||||| ||||||  |||||||| || | ||| || |||    |||   ||||  | || |     | ||   | | |||  |    |  ||    |     |   |  |   |||    |  || | ||                                                       
CTTTGGAGGAACCTTGTTAGCTATGTGTTCAAGTGATTTCATCTGCTTTTATGATTGGGCTGAATGTAGGCTGATTCAACGTATTGACGTCACTGTAAAGgtatcccagttaacttggctcagtttattgtaagaagtttacttcaagacatatttggaatagtggaaactaatatcattgccttcagtttgaggttttcctcgtttgtttcttctctaatttgtagtgttgctacataacgtttgcag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 13
ATTTGGCGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTACGATTGGGTTGAGTGTAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtggcatca--gctttctgcttttatttcttctta--ctgtttcttatttttgttaaat--ttttcttgtgtcag
 | ||| ||  |  |  |||| || ||||||||||| ||||| || ||||| || |||| |||||| ||||||||||| || |||||||| ||||| || | | || ||   |  || |  | |||    |  | | ||||          |  ||  |  ||  |||  ||   |  |||   | | ||||
TTATGGAGGGGCACTTCTGGCGATATGCTCAAATGACTTCATTTGTTTTTATGACTGGGCTGAGTGCAGGTTGATTCGGCGGATTGATGTCAATGTCAAGgcatgttctcaaa-aagcttacttcacaattaccaggttttggccacagagaaactaatagttcatttctttgggtggtttcaatatttcag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 13
ATTTGGCGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTACGATTGGGTTGAGTGTAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtggcatcagctttc-tgcttttatttcttcttactgtttcttatttttgttaaatttttcttgtgtcag-----------------------
 ||||| || ||| ||||||||||||||||||||||||| || || || || || |||| ||| || ||| ||||||| || |||||||||||||| ||||||||  ||  ||||| |     |  |||  | || | || |||           | |     ||  |||||| || ||| | ||                         
TTTTGGAGGAACTTTATTGGCAATGTGCTCAAATGATTTTATTTGTTTCTATGACTGGGCTGAATGCAGGCTGATTCGACGAATTGATGTTAATGTCAAAgtaagcactaacatgatggcctgttggctaccgtggtattgttttcatgccacactgcaggaattgattaaatgttccttttttcttttctttttttttcactatttcag