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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCCTCTGTAGCCAAAACCTTCTTAATGTCAGATTGCGTGGTTGTTGAGATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagttgtaaatagagtatctatggttgtaaagtgtgtgaatctacactacttttcaaccctttcattgagatttcaatattatgaaaatgtattt...

Basic information

species Glycine max
transcript GLYMA08G18760.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208094046|gb|GD894471.1|GD894471
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|209702280|gb|BW677975.1|BW677975
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|12496349|gb|BG047019.1|BG047019
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|6454762|gb|AW185445.1|AW185445
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|209698543|gb|BW652409.1|BW652409
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|21675639|gb|BQ627990.1|BQ627990
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|6455205|gb|AW185888.1|AW185888
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|207845936|gb|GD818487.1|GD818487
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|193392977|gb|FK360187.1|FK360187
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|16278312|gb|BI942837.1|BI942837
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|6228217|gb|AW156816.1|AW156816
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|254328223|gb|GR835188.1|GR835188
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|20814636|gb|BQ299114.1|BQ299114
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|208069778|gb|GD870441.1|GD870441
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|193545741|gb|FK502722.1|FK502722
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGGCAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|193454215|gb|FK417688.1|FK417688
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|6915381|gb|AW396911.1|AW396911
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAT                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|120534219|gb|EH262352.1|EH262352
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|193397919|gb|FK363785.1|FK363785
EST:     AAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: AAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|193694924|gb|FK634324.1|FK634324
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACCCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|193311611|gb|FK275521.1|FK275521
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAG
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAG
EST: gi|7685797|gb|AW756445.1|AW756445
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGA
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGA
EST: gi|7639932|gb|AW734243.1|AW734243
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|208107274|gb|GD907861.1|GD907861
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|208309874|gb|GE102560.1|GE102560
EST:     ACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: ACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|193511949|gb|FK471401.1|FK471401
EST:     ACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: ACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|207725966|gb|GD702752.1|GD702752
EST:     AACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: AACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|10232698|gb|BE801586.1|BE801586
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|193691608|gb|FK629725.1|FK629725
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGGCAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|208181642|gb|GD975077.1|GD975077
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|8402244|gb|BE057878.1|BE057878
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAA                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGA
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGA
EST: gi|6718933|gb|AW306580.1|AW306580
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|193567863|gb|FK526482.1|FK526482
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGGCAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|27427470|gb|CA938990.1|CA938990
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|254322415|gb|GR837829.1|GR837829
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|207843242|gb|GD816844.1|GD816844
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTCCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|6227700|gb|AW156299.1|AW156299
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|16344875|gb|BI970470.1|BI970470
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|193320008|gb|FK287643.1|FK287643
EST:     TAAAGGAACCTGAGGCCATACCTGCTGGAAAACCCCCATGGACAATTCAG                         GATATGGCCTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTACT
genomic: TAAAGGAACCTGAGGCCATACCTGCTGGAAA-CCCC-ATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|46492945|gb|CN472501.1|CN472501
EST:     GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
EST: gi|151401056|gb|EV270870.1|EV270870
EST:     GGTAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAG                         GATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT
genomic: GATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagtt ... tcttctccagGATATGGACTCTAGAGCAACGAGCAACGGCTGCTTCAGTGAGAAGAGTATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGCCTCTGTAGCCAAAACCTTCTTAATGTCAGATTGCGTGGTTGTTGAGATAAAGGAACCTGAGGCCATACCTGCTGGAAACCCCATGGACAATTCAGgtatgtagttgtaaatagagtatctatggttgtaaagtgtgtgaatctacactacttttcaaccctttcattgagatttcaatattatgaaaatgtattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA