1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGATTGACAACAATGAAACTATAAAGGTTTATAGAAGTGGTGGTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACCATCAAGgtaactcttcaatctattcatagcttggtgaacatttccatttttatgctatatcttctcataagcccaataacttttttatcgttttcctttgtgcag
species | Glycine max |
transcript | GLYMA08G16150.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTTTATGTTACCATCAAG GTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGATEST: gi|208112259|gb|GD913672.1|GD913672
genomic: CTTTATGTTACCATCAAGgtaactcttc ... ctttgtgcagGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGAT
EST: GTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACCATCAAG GTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGATEST: gi|207750723|gb|GD723948.1|GD723948
genomic: GTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACCATCAAGgtaactcttc ... ctttgtgcagGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGAT
EST: GTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACCATCAAG GTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGAT
genomic: GTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACCATCAAGgtaactcttc ... ctttgtgcagGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATTGACAACAATGAAACTATAAAGGTTTATAGAAGTGGTGGTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACCATCAAGgtaactcttcaatctattcatagcttggtgaacatttccatttttatgctatatcttctcataagcccaataacttttttatcgttttcctttgtgcag
- - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT