Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGACGCTGATCAGAGGATAACTCATGACTTGGAGAAGTTAACAACAGACTTGTCAGGACTGGTCACTGGAATGGTAAAGCCATCTGTGGATATTTTGTGgtgagtacttcatttgcaaaatagagttattatgttactatggtgtattttactagtacatggtgaattaacatattgatgcatgctctgtctttatttacttactgagtactttcattactctaaag

Basic information

species Glycine max
transcript GLYMA08G14480.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14480.1 (Glycine max), 5'ss of exon 13
lower sequence: AT4G39850.2 (Arabidopsis thaliana), 5'ss of exon 16
TTGACGCTGATCAGAGGATAACTCATGACTTGGAGAAGTTAACAACAGACTTGTCAGGACTGGTCACTGGAATGGTAAAGCCATCTGTGGATATTTTGTGgtgagtacttcatttgcaaaatagagttattatgttactatggtgtattttactagtacatggtgaattaacatattgatgcatgctctgtctttatttacttactgagtactttcattactctaaag
|||| || || |||||  | |||| |||| |||| ||||||||  | |||||||| |||||  | |||||||||||||||||||| || || ||| | ||||  ||||   |  ||    || || || | || ||  | |  ||  | ||  |   |  |     | |   | |   |  ||   |                                         
TTGATGCGGACCAGAGACTCACTCGTGACCTGGAAAAGTTAACCGCTGACTTGTCTGGACTTCTTACTGGAATGGTAAAGCCATCGGTTGACATTCTCTGgtacgtacgcta--tgttggattgatttctaatatttgtttcatggttcttggtttgaattatcataatgcaaaaaaaaaacaaattgaag-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15288034|gb|BI471925.1|BI471925
EST:     CTGGAATGGTAAAGCCATCTGTGGATATTTTGTG                         GTTCACTTGGAGAATGAAGATGTTAACAGGTCGGAGGGGAGTTGCCATACT
genomic: CTGGAATGGTAAAGCCATCTGTGGATATTTTGTGgtgagtactt ... tactctaaagGTTCACTTGGAGAATGAAGATGTTAACAGGTCGGAGGGGAGTTGCCATACT