Sequence
atgc intronic sequence ATGC exonic sequenceCCTGCCCACGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgttttccatgattattactgttagattcaatagttttactcatatagccgatgtaagatatgtatgtttttctttgcttttgtag
Basic information
species | Glycine max |
transcript | GLYMA08G14040.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G14040.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv14s0036g00790.t01 (Vitis vinifera), 5'ss of exon 1
-------------------------CCTGCCCACGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgttttccatgattattactgttagattc----------aatagttttac--tcatatagccgatg---taagatatgtatgtttttctt-tgcttttgtag
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TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTTGCTCGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccattatgtttttatag
upper sequence: GLYMA08G14040.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 5'ss of exon 8
CCTGCCCACGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgttttccatgattattactgttagattc----------aatagttttac--tcatatagccgatg---taagatatgtatgtttttctt-tgcttttgtag
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CCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag
upper sequence: GLYMA08G14040.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 13
CCTGCCCACGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgttttccatgattattactgttagattc-----------aatagttt-tactcatatagccgatg---taagata-tgtatgtttttctttgcttttgtag
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CCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaacttttctactacatttttatttatataaatgttttgtaatgaaaagatctatgaaatagaatactggattaaccgctatgtttttatag
upper sequence: GLYMA08G14040.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv17s0000g02780.t01 (Vitis vinifera), 5'ss of exon 1
-------------------------CCTGCCCACGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgttttccatgattattactgttagatt----------caatagttttac--tcatatagccgatg---taagatatgtatgtttttctt-tgcttttgtag
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TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaataatcttcagaaaaattttctactacattgttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag
upper sequence: GLYMA08G14040.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv13s0106g00570.t01 (Vitis vinifera), 5'ss of exon 4
CCTGCCCACGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgttttccatgattattactgttagattc----------aatagttttac--tcatatagccgatg---taagatatgtatgtttttctt-tgcttttgtag
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CCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207752629|gb|GD724957.1|GD724957EST: TTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAG GGAGAATCACAACCTGGGAAAGCGCCATGGCATGGGG
genomic: TTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgtt ... gcttttgtagGGAGAATCACAACCTGGGAAAGCGCCATGGCATGGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTGCCCACGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgttttccatgattattactgttagattcaatagttttactcatatagccgatgtaagatatgtatgtttttctttgcttttgtag
- - - - - - - - - - - - - - - - - AGTGGA