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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCTTGAGGATGAGCTGGAAGAAACTGAGATTGAGGGATTCTGTTCTCAAGTGCAGACTTTATTTTGCCATGATGCAGTTCATAATCAACTTGTTCAAgtaggttcttgccttattaccatattggttttcttttcatcttgatttaacacctacatctttttagtttctttgttatataaaagattgtccattttgt...

Basic information

species Glycine max
transcript GLYMA08G13680.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 13
lower sequence: AT4G05420.2 (Arabidopsis thaliana), 5'ss of exon 12
GAATCTTGAGGATGAGCTGGAAGAAACTGAGATTGAGGGATTCTGTTCTCAAGTGCAGACTTTATTTTGCCATGATGCAGTTCATAATCAACTTGTTCAAgtagg---ttct--tgcctta---ttaccata-------ttggttttcttttcatcttgatttaacacctacatctttttagtttctttgt-----tatataaaagattgtccattttgt-----
||||||||||||||| ||||||||||| ||||||||||| ||||  |||||||||||||| ||||||||||||||||| ||  | ||||||||||| || ||| |   ||||  ||| ||    ||  || |       |   |||  |     |  |   |||         ||| |    | | |||||     |  || ||    || |  || ||      
GAATCTTGAGGATGAACTGGAAGAAACAGAGATTGAGGGCTTCTTGTCTCAAGTGCAGACGTTATTTTGCCATGATGCTGTGTACAATCAACTTGTACAGgtaagaatttctaatgctttggggttttcaaaagacaattaaatttgatagctgttatagcttagttgtctggtctatcctctctatttgtgaacatgaattaactgctgccttttctggatcag

upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 13
lower sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 13
GAATCTTGAGGATGAGCTGGAAGAAACTGAGATTGAGGGATTCTGTTCTCAAGTGCAGACTTTATTTTGCCATGATGCAGTTCATAATCAACTTGTTCAAgtaggttcttgccttattaccatattggtttt----cttttcatcttgatttaacacctacatctttttagtttctttgttatataaaagattgtccattttgt
|||| | |||||||| ||||||||||| ||||||||||| || |  ||| |||| ||||||||||||||||||||||| ||  | || |||||||| || ||| | | |||||    | |   ||| ||||     | |||  |  |  |||||   |  ||       |  || |||||   |    |  || |  ||     
GAATATAGAGGATGAACTGGAAGAAACAGAGATTGAGGGTTTTTTGTCTGAAGTTCAGACTTTATTTTGCCATGATGCTGTCTACAACCAACTTGTACAGgtatgat-ttgccagtgttcttcattagtttctatgcctttgcttgtagtttaatttcaccagacagggaaattttttgtcgaactccattttatagataa---

upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 13
GAATCTTGAGGATGAGCTGGAAGAAACTGAGATTGAGGGATTCTGTTCTCAAGTGCAGACTTTATTTTGCCATGATGCAGTTCATAATCAACTTGTTCAAgtaggttcttgccttattaccatattg-gttttcttttcatcttgatttaacacctacatctttttagtttctttgttatataaaagattgtccattttgt
||||||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||| ||| || ||||||| || |||||||| | |     | |     | ||   || | ||||  | |  | ||   |   | ||   |  | || |||    |   ||   |  || ||      
GAATCTTGAAGATGAGTTGGAAGAAACTGAGATAGAGGGTTTCTGTTCTCAAGTGCAGACTTTGTTCTGCCATGATGCTGTTTATGATCAACTAGTACAAgtaggctttcttaatttgggtgttttatattatttttttctgtataatttggattgatattaataaatttccttaacgaatcaacccaaagtgcaccaaa-