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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAGgtataccgaaaatagtggatgactggaagttattttgtttgtatttatttaattagtgtcttgatattagtattatggatgttgccattgtctttcataa...

Basic information

species Glycine max
transcript GLYMA08G13560.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13560.2 (Glycine max), 5'ss of exon 13
lower sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 13
TGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAGgtataccgaaaatagtggatgactggaagttattttgtttgtatttatttaattagtgtcttgatattagtattatggatgttgccattgtctttcataa
||| || ||||| ||| ||||| | |||||||| || || || ||||||||||| || ||||| || ||||| ||||| || |||||||| |||||||||||| |     |  |  ||    ||| || | | | |  ||||  |     || ||   |  || |   |   || |  || |||  ||  | || ||   
TGCATCAGTCAACTCTATTCACTTGTTCCCCAAAAACACAGAACACATTGTTGTGTGCAACAAGACATCATCTATATACATTATGACACTCCAAGGACAGgtaaatttccagcaacggtctcctgcaaatcagtgtcattgtcatgccaaaactaagat--tgttcacatgcttct--atattggaatccttttgcag--

upper sequence: GLYMA08G13560.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv17s0000g08930.t01 (Vitis vinifera), 5'ss of exon 13
TGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAGgta-----taccgaaaatagtggatgactggaagttattttgtttgtatttatttaattagtgtcttgatattagtattatggatgttgccattgtctttcataa
 || ||||| |||   |||||  |||||||||| ||||| || || ||| |||| |||||||  || ||||| |||||  | |||||||||||||||||||||     |        | |||||     ||  |  ||        ||||| ||   ||||| | ||| |||    | || |||  |  |||       | |   
CGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGACCATATTATTGTGTGTAACAGGACATCATCAATATACCTTATGACACTTCAAGGACAGgtacttattctttttctttgtggaaactagggtgagatagcacac-tatttgttattttagtctgttg-tatagacaata-ggaaataacca--actgatgaggg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208155709|gb|GD958470.1|GD958470
EST:     TTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAG                         GTTGTGAAGAGCTTCTCATCTGGTAAAAGAGAAGGCGGAGACTTTGTTGCA
genomic: TTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAGgtataccgaa ... caattgatagGTTGTGAAGAGCTTCTCATCTGGTAAAAGAGAAGGCGGAGACTTTGTTGCA
EST: gi|209710369|gb|BW681268.1|BW681268
EST:     TTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAG                         GTTGTGAAGAGCTTCTCATCTGGTAAAAGAGAAGGCGGAGACTTTGTTGCA
genomic: TTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAGgtataccgaa ... caattgatagGTTGTGAAGAGCTTCTCATCTGGTAAAAGAGAAGGCGGAGACTTTGTTGCA