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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTCTTCAAGATATCAAAGATGCTACTGGTATTGAGGACAAGGAACTGAGACGGATTCTGCAATCACTAGCTTGTGGTAAAGTTCGTGTCCTACAAAAGgtgtgtttgtaatcatttgtagaatttccaatatataacttttgtttgtaattatggtctctgtatattttttgatatttttccctttaatgaacatgcaacag

Basic information

species Glycine max
transcript GLYMA08G10180.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 13
lower sequence: AC177936.6_FGT008 (Zea mays), 5'ss of exon 1
AAGTCTTCAAGATATCAAAGATGCTACTGGTATTGAGGACAAGGAACTGAGACGGATTCTGCAATCACTAGCTTGTGGTAAAGTTCGTGTCCTACAAAAGgtgtg--------tttgtaatcatttgtagaatttccaatatataacttttgtttgtaattatggtctctgtatattttttgatatttttccctttaatgaacatgcaacag
|||  | |  || ||||||||| | |||||||| ||||| || ||| |||||||||  |||||||| || || |||||||||||||| || || |||||||||||        ||||| |||||   | | |||| || |||  | ||| | |    |||| |  |||    || ||||  |                              
AAGCTTCCTTGACATCAAAGATTCCACTGGTATCGAGGATAAAGAATTGAGACGGACACTGCAATCGCTTGCATGTGGTAAAGTTCGGGTTCTCCAAAAGgtgtgatcctttttttgtcatcatcatttgcattttcagtatgcagcttcttt----aattgtaatct----atgttttcag------------------------------

upper sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 13
lower sequence: AC155496.2_FGT009 (Zea mays), 5'ss of exon 13
AAGTCTTCAAGATATCAAAGATGCTACTGGTATTGAGGACAAGGAACTGAGACGGATTCTGCAATCACTAGCTTGTGGTAAAGTTCGTGTCCTACAAAAGgtgtgtttgtaatcatttgtagaatttccaatatataacttttgtttgtaattatggtctctgtatattttttgatatttttccctttaatgaacatgcaacag
|||  |    || ||||||||| | |||||||| ||||| || ||| ||||||| |   ||||||| || || |||||||||||||| || || |||||||||||||  |  |  ||||    ||   || | |  |  ||  || || |  |    | |   | ||   |||| | |                          
AAGCTTCATTGACATCAAAGATTCCACTGGTATCGAGGATAAAGAATTGAGACGAACATTGCAATCTCTTGCATGTGGTAAAGTTCGGGTTCTCCAAAAGgtgtgttcctttttttttgccccatcgtcattttgcattttcagtatgcagcttc--tttaattgtaacctttgttttcag-----------------------

upper sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 13
AAGTCTTCAAGATATCAAAGATGCTACTGGTATTGAGGACAAGGAACTGAGACGGATTCTGCAATCACTAGCTTGTGGTAAAGTTCGTGTCCTACAAAAGgtg--------tgtttgtaatcatttgtagaatttccaatatata----------acttttgtttgtaattatggtctctgtatattttttgatatttttccctttaatgaacat-gcaacag-------
 ||  |||||||||| || ||  ||||||| |||||||| |||||  ||||| ||| |||||| || || || ||||| |||||||||||||| |||||||||        ||   | |||  | |||  | |||   |||||||          |||||    |  |||||     |    |  ||||    | ||||    | |    || ||   |   |       
TAGCTTTCAAGATATTAAGGACTCTACTGGCATTGAGGATAAGGAGTTGAGAAGGACTCTGCAGTCCCTTGCATGTGGAAAAGTTCGTGTCCTTCAAAAGgtgaggggttatggcaggaattgtgtgttcattttgatatatatatatatttatcactttcagatagaattacaaattggtgagcttttaccttgttttcttgtctgcaaaatattatatttgtttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21285971|gb|BQ473842.1|BQ473842
EST:     GAAGGACTCTGCAATCACTAGCTTGTGGTAAAGTTCGTGTCCTACAAAAG                         ATGCCCAAAGGAAGAGATGTGGAGGACGATGACTTATTTGTTTTTAATGAT
genomic: GACGGATTCTGCAATCACTAGCTTGTGGTAAAGTTCGTGTCCTACAAAAGgtgtgtttgt ... catgcaacagATGCCCAAAGGAAGAGATGTGGAGGACGATGACTCATTTGTTTTTAATGAT