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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGCTTACACATGTTCACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgttgccttcttaactccaaccttctgcccccattatttgtcctccatcttgcttcttattgttttctgaattccaactgcgaagacatttac...

Basic information

species Glycine max
transcript GLYMA08G09170.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G155729_T03 (Zea mays), 5'ss of exon 11
GTCTGCTTACACATGTTCACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgtt--gccttcttaactccaaccttctgccc--ccat----tatttgtcctccatcttgcttcttattgt--tttctgaattccaactgcgaagacatttac-----------------------------------------------------------------------
 ||||||| || ||||| ||| |||||||||||||||||||| ||||  | |||||||| || |||||||  || | ||   | ||| | | ||   |  | |  ||   |||     ||||  ||      ||  |   || |||  || ||| |||    |||    | |  | ||                                                                       
ATCTGCTTGCATATGTTTACTTTGGATTTTCTGAACCAAGTGACAAACAGTCTTGAAAAGGATAGCATgtgagtatttttttctttccttattcttgcactttatccattcatgttacatttaaccctttatttaatatataatgtaattgctgcattttttctggagggcctgtaacttctgttgatcttaaactaacaattaataatagaatattggcttacaattttgtccatcgtttatgcacag

upper sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G044629_T03 (Zea mays), 5'ss of exon 11
GTCTGCTTACACATGTTCACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgttgccttcttaactccaaccttctgcccccattatttgtcctccatcttgcttcttattgttttctgaattccaactgcgaagacatttac---------------------------------
 ||||| | ||||||||||||||||| ||  ||||||||||||||||  ||||||| || |||||  ||| || |||||| ||  ||  |  |  ||||||  ||  | |    |||  |  ||  || |       |    |      |  |  |      |  | |                                 
ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAG--TGTgtgagtgttgtctagtttgcctctgccttctctccaaaatgcc-gtcgccagtcaggccttgagcgatagagtaggcaaccgcatctgttggacctgcctgacagttgtgtgtcgtcgatcttgtgagcag

upper sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G044629_T02 (Zea mays), 5'ss of exon 11
--------------------------------GTCTGCTTACACATGTTCACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgttgccttcttaactccaaccttctgcccccattatttgtcctccatcttgcttcttattgttttctgaattccaactgcgaagacatttac---------------------------------
                                 ||||| | ||||||||||||||||| ||  ||||||||||||||||  ||||||| || |||||  ||| || |||||| ||  ||  |  |  ||||||  ||  | |    |||  |  ||  || |       |    |      |  |  |      |  | |                                 
AAACTGTTCTCTCCTTTTTTTTTTTTTTGTAGATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAG--TGTgtgagtgttgtctagtttgcctctgccttctctccaaaatgcc-gtcgccagtcaggccttgagcgatagagtaggcaaccgcatctgttggacctgcctgacagttgtgtgtcgtcgatcttgtgagcag

upper sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 13
lower sequence: AT2G35020.1 (Arabidopsis thaliana), 5'ss of exon 12
GTCTGCTTACACATGTTCACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgttgccttcttaactccaaccttctgcccccattatttgtcctccatcttgcttcttattgttttctgaattccaactgcgaagacatttac
|| |||||||||||||||||||||||||| || |||||||| || ||||| || |||||||||||| ||    || | ||| || |  |||  ||  || | |  | ||       | |    | |  |   ||     |   ||||  |   |||            
GTGTGCTTACACATGTTCACTCTGGATTTCCTTAACCAAGTTGCGAATGGGCTGGAAAAAGACAGCGTg----tgagatgcttttt--actgaaattttatcctgcaatatgcaaacatttgacatattcaataactgatagcgaatctc--ttgcag----------

upper sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 12
GTCTGCTTACACATGTTCACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtg-tgttgccttcttaactccaacctt--ctgcccccattatttgtcctccatcttgcttcttattgttttctgaattcca-actgcgaagacatttac
|| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||  ||  | ||  | | ||   ||||  |||  ||| | |  |  ||||    |    |     |  |  |  ||    |||  | | ||     | ||    
GTGTGCTTACATATGTTTACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATgtcagtaattttatccttttccttccatgcttttctgtctctttcttttgaaaccacattcaagacccacaggattacccatttaacattgacctaaaat----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208191545|gb|GD992781.1|GD992781
EST:     ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCAT                         TTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
genomic: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgt ... ttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
EST: gi|254342038|gb|GR853175.1|GR853175
EST:     ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCAT                         TTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
genomic: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgt ... ttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
EST: gi|4313957|gb|AI461076.1|AI461076
EST:     ACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCAT                         TTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
genomic: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgt ... ttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
EST: gi|8282791|gb|BE020352.1|BE020352
EST:     GAAAAAGACAGCAT                         TTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
genomic: GAAAAAGACAGCATgtatgtgtgt ... ttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
EST: gi|208215335|gb|GE011090.1|GE011090
EST:     ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCAT                         TTATCATCTTGCAGAAGAAAGAAAATAACCTT
genomic: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgt ... ttatgtgcagTTATCATCTTGCAGA-GAA-GAAAATA-CCTT
EST: gi|298176684|gb|HO026805.1|HO026805
EST:     ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCAT                         TTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
genomic: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgt ... ttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
EST: gi|151397105|gb|EV266978.1|EV266978
EST:     ACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCAT                         TTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
genomic: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgt ... ttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
EST: gi|254329705|gb|GR839258.1|GR839258
EST:     ACTCTGGATTTTCTGAATCAAGTGGCAA-TGGCCTTGAAAAAGACAGCAT                         TTATCATCTTGCAGAGAAGAAA-TACCTTCCATACATGGATATACA-TGGG
genomic: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgt ... ttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG