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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATGGATAAAGCTTCAAGAAATGGAAACTTGAAAGATATCAAGCTTAGCTTTGTTGGTCATTCTATTGGGAATCTCATTATCAGGACAGCCTTGACAGgtatctaagcgcaaagtttttaaggataactactattcacaaaaattaaactagggaaagtaacatgcttattttattttatttaaataattccagagagcgtcatggagccatatctaagatacttacatacatatgtctccatatcgggtccacacttgggttatatgtatagttcaaactctctattcaattcag

Basic information

species Glycine max
transcript GLYMA08G08190.3
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08190.3 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os11g06690.1 (Oryza sativa), 5'ss of exon 9
AAGATGGATAAAGCTTCAAGAAATGGAAACTTGAAAGATATCAAGCTTAGCTTTGTTGGTCATTCTATTGGGAATCTCATTATCAGGACAGCCTTGACAGgtatctaagcgcaaagtttttaaggataactactattcacaaaaattaaactagggaaagtaacatgcttattttattttatttaaataattccagagagcgtcatggagccatatctaagatacttacatacatatgtctccatatcgggtccacacttgggttatatgtatagttcaaactctctattcaattcag
|| || ||||    |||||||||||||  ||  |||||| | ||||||||||||||||||||||| ||||| ||  | |||||||| |  ||| |  ||||||  |           |||  |   | ||| | |   |   |  |    || |    | ||||   |   || | ||  ||| ||                                                                                                                
AAAATTGATAGGTATTCAAGAAATGGAGGCTGCAAAGATTTGAAGCTTAGCTTTGTTGGTCATTCCATTGGAAACATTATTATCAGAAGTGCCCTAGCAGgtagtt-----------tttccaactttacttccaaatatgtagctggctct-gtctgactaactaaccagttcttttccattcaacag-------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA08G08190.3 (Glycine max), 5'ss of exon 13
lower sequence: AT1G58350.3 (Arabidopsis thaliana), 5'ss of exon 11
AAGATGGATAAAGCTTCAAGAAATGGAAACTTGAAAGATATCAAGCTTAGCTTTGTTGGTCATTCTATTGGGAATCTCATTATCAGGACAGCCTTGACAGgtatctaagcgcaaagtttttaaggataactactattcacaaaaattaaactagggaaagtaacatgcttattttattttatttaaataattccagagagcgtcatggagccatatctaagatacttacatacatatgtctccatatcgggtccacacttgggttatatgtatagttcaaactctctattcaattcag
|| | ||||| |  | ||||| | ||  | ||||||   |||||  | || |||||||||||||||||||| ||| |||| ||||| |||||  |  | ||||  ||  |    |  | |     |||   | |       |    |     || |    | ||||   | |||| || | || |                                                                                                                 
AAAAAGGATAGATATGCAAGACAAGGGCATTTGAAAAGCATCAAATTGAGTTTTGTTGGTCATTCTATTGGCAATGTCATCATCAGAACAGCAATTGCCGgtaa-tattctttgaactctggtaaatattgaatgactcttagttatgtttcagtgtttttgacat--ctcttttgttct-ttcag----------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA08G08190.3 (Glycine max), 5'ss of exon 13
lower sequence: Vv12s0055g00430.t01 (Vitis vinifera), 5'ss of exon 11
AAGATGGATAAAGCTTCAAGAAATGGAAACTTGAAAGATATCAAGCTTAGCTTTGTTGGTCATTCTATTGGGAATCTCATTATCAGGACAGCCTTGACAGgtatctaagcgcaaagtttttaaggataactactattcacaaaaattaaactagggaaagtaacatgcttattttattttatttaaataattccagagagcgtcatggagccatatctaagatacttacatacatatgtctccatatcgggtccacacttgggttatatgtatagttcaaactctctattcaattcag
|| ||||||||||  ||| || |||||| ||| | | |||||||||||||||||||||| ||||| || || ||| | ||||| || || || ||| ||||||  ||  |    |||||| |    | | | | ||   |  |  |||  ||  |  |  |  |     | | ||  ||| |||    |                                                                                                             
AAAATGGATAAAGTCTCACGACATGGAACCTTAAGAAATATCAAGCTTAGCTTTGTTGGGCATTCCATCGGAAATGTTATTATTAGAACTGCATTGGCAGgtaggtactct---agttttgattcttgaatgccatgttcttaggttagtctgtgatatattgctgatgtctgttgctttgttttggcag------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193578888|gb|FK536694.1|FK536694
EST:     TTCTATTGGGAATCTCATTATCAGGACAGCCTTGACAG                         GGTTGTGGATATTGAAGAAGCTCAAGGGCACACAATGCATTCACCAACTTA
genomic: TTCTATTGGGAATCTCATTATCAGGACAGCCTTGACAGgtatctaagc ... ttcaattcagGGTTGTGGATATTGAAGAAGCTCAAGGGCACACAATGCATTCACCAACTTA