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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTTCCCACCCAAATTTTATTGGTGGAAGTAAGGCAATAGAAGCTGCAGTGCAACAAACCAGGTCTTCTAGAGTTGGTTTACCAGTTTCTAGGGTGAAGgtatacatattatggcctctaatccagttatatgctctgtttttcatgctagacatgaatgctaatttatgctcttctatcttttgttttaaatcctcttcttaatttataatag

Basic information

species Glycine max
transcript GLYMA08G07160.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 14
CACTTCCCACCCAAATTTTATTGGTGGAAGTAAGGCAATAGAAGCTGCAGTGCAACAAACCAGGTCTTCTAGAGTTGGTTTACCAGTTTCTAGGGTGAAGgtatacatattatggcctctaatccagttatatgctctgtttttcatg--ctagacatgaatgctaatttatgctcttctatcttttgttttaaatcctcttcttaatttataatag----
 ||||| |||||||||||||||||||||||||| ||  | ||    ||| ||||||| |  | ||| |||||  |   | |||| ||  | |||  ||||||| |   ||   |  ||     ||| ||  ||  |  || ||  |||  ||||   |   |   || |  |     ||   | ||| ||| |  |  | ||||| |||  |   |     
TACTTCACACCCAAATTTTATTGGTGGAAGTAAAGCTGTGGAGATGGCATTGCAACAGATTAAGTCCTCTAGGCTGCCTGTACCTGTAGCCAGGCAGAAGgtaaatgcatgcagtgctgctggccattttaattttaagtgttgtatgttctaggtctagtttgcaaatagt-tagatcacccatttttttcagcttttattctttattgttgtcaattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12496581|gb|BG047136.1|BG047136
EST:     TGCAACAAACCAGGTCTTCTAGAGTTGGTTTACCAGTTTCTAGGGTGAAG                         GATGCACTGGAATCTGATAAGGGACCAGCTACTGAGAGAAGTGGGAAGTCT
genomic: TGCAACAAACCAGGTCTTCTAGAGTTGGTTTACCAGTTTCTAGGGTGAAGgtatacatat ... tttataatagGATGCACTGGAATCTGATAAGGGACCAGCTACTGAGAGAAGTGGGAAGTCT