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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTCGAACAGGACAGATAGACTTGTCTCAGTTTGGAATTGATCCAAGTAAATgtgagtagtactttcttgtttttcgtctagcccaagtattaagtcctatttgcgtttttaatgcccattgtagttttcttctctcatctagcttgttcta...

Basic information

species Glycine max
transcript GLYMA08G03080.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03080.1 (Glycine max), 5'ss of exon 13
lower sequence: AT2G26590.1 (Arabidopsis thaliana), 5'ss of exon 12
GTACTTCGAACAGGACAGATAGACTTGTCTCAGTTTGGAATTGATCCAAGTAAATgtgagtagtactttct-tgtttttcgtctagcccaagtattaagtcctatt-tgcgtttttaatgcccattgtagttttcttctctcatctagcttgttcta
||||| || |||||||| ||||| ||| |||||||||| || || ||||||||||||||||  | ||| |  |||| ||    |       || |    | || || |||  ||||||   |  ||| ||                           
GTACTCCGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGTAAATgtgagtgattcttacgatgttgtttccattcttgttgtttctttttctcttatgcagttttaa---cttttgcag---------------------------

upper sequence: GLYMA08G03080.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv11s0065g00450.t01 (Vitis vinifera), 5'ss of exon 13
GTACTTCGAACAGGACAGATAGACTTGTCTCAGTTTGGAATTGATCCAAGTAAATgtgagtagtactttcttgtttttcgtct--agcccaagtattaagtcctatttgcgtttttaatgcccattgtagttttcttctctcatctagcttgttc-ta-----------------------------------------------------------
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||| | |     |||     ||  |  ||  | | | | |   |  |   | |  ||      || |  | ||    | |  | |   | |||  ||                                                           
GTACTTCGAACAGGGCAGATAGATTTGTCTCAGTTTGGAATTGATCCAAGTAAATgtaagtagttcgtatagctttaaaaacttaaatcctggcaatgaatttaacctcgctgtgaaagatttcttcttttatttagttattgtttcattagtttatagacttggtggctagatttttttgttttaaaagaaataatttttccctttttccatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21675496|gb|BQ627847.1|BQ627847
EST:     TCGAACAGGACAGATAGACTTGTCTCAGTTTGGAATTGATCCAAGTAAAT                         ACAAGTTCACAGTTTTGTCTTTTCTTGAGGCTCTTGAGGATTCTGTTTCTA
genomic: TCGAACAGGACAGATAGACTTGTCTCAGTTTGGAATTGATCCAAGTAAATgtgagtagta ... ttcttagcagACAAGTTCACAGTTTTGTCTTTTCTTGAGGCTCTTGAGGATTCTGTTTCTA
EST: gi|18039244|gb|BM307538.1|BM307538
EST:     TCGAACAGGACAGATAGACTTGTCTCAGTTTGGAATTGATCCAAGTAAAT                         ACAAGTTCACAGTTTTGTCNNNNNNNGAGGCTCTTGAGGATTCTGTTTCTA
genomic: TCGAACAGGACAGATAGACTTGTCTCAGTTTGGAATTGATCCAAGTAAATgtgagtagta ... ttcttagcagACAAGTTCACAGTTTTGTCTTTTCTTGAGGCTCTTGAGGATTCTGTTTCTA