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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCATCAGgttgtttggattttcttatgctttgagctatctatgtactatgaattttgggttcctcatgttgatggaactaaataaagaaatgttttgcag

Basic information

species Glycine max
transcript GLYMA08G01040.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01040.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G459746_T01 (Zea mays), 5'ss of exon 13
AACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCATCAGgt--------tgtttggatt-------ttcttatgctttgagctatctatgtactatgaattttgggttcctcatg----ttgatggaactaaa---taaagaaatgttttgcag--------------------------------------------
|| |||||||||||||||||||| ||||| |||||||   || ||   || || ||||| ||  |||||||        | ||   |||       | ||  ||| ||||  ||    ||||   |    |||||    || ||     |||    |  |  |   | |  |||| |   ||                                              
AATAAATGTAATGTTGGCTATGCTTTCATCAACATGACCAATGCTCAGCATATCATTCCATTTTATCAGgtcagaaaattattccaattgacgaagtgctactgcattgatgtaaagttgtaaactagcctttggtcaacttatatgccttgccaaatttgtactttgataaaatatccggcttgaacatcgacgtgctatcctgagccattttgtcatctttttcag

upper sequence: GLYMA08G01040.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 13
AACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCATCAGgttg-----tttggattttcttatgctttgagctatctatgtactatgaatttt----gggttcctcatgttgatggaactaaataaag-----aaatgttttgcag--------------------------------------
|||||||| ||||| |||||||| ||  | |||||||||||||||  ||| ||| |||| ||||||||||||        || ||| |  |||  ||  |  ||  ||  |  |  |  |||     |    | || |||  |  ||| |  |||| |     || || | || |                                       
AACAAATGCAATGTGGGCTATGCTTTTGTCAACATGATTGATCCTCTTCATATTGTTCCATTCCATCAGgttagaatccatgcattgtaatataattatacttaa-tacttttttcggctttcaaaggaaagcttcttgtctacagaatttcataaggtctgcaactgatatggactgagaactgctaatcagaatgtatcatatatttcacag

upper sequence: GLYMA08G01040.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ28200 (Selaginella moellendorffii), 5'ss of exon 10
AACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCATCAGgttgtttggattttcttatgctttgagctatc-tatgtactatgaattttgggttcctcatgttgatggaactaaataaagaaatgttttgcag
|||||||| || ||||||||||||||||| |||||||  || || | ||| ||  | || ||  |  |||||   |  ||| |||    | |   | | |  |   |  |      | || |    |||                                  
AACAAATGCAACGTTGGCTATGCATTCATCAACATGACCGAGCCAGCTCACATCGTCCCCTTTTACAAGgttcgatcaattctctcgctcctctggttgtaatccttgttggtggctctgtgactttcag---------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13480999|gb|BG510342.1|BG510342
EST:     ATGATTGATCCTGGTCAAATTATTCCTTTCCATCAG                         GCTTTTGATGGGAAAAAATGGGAGAAGTTTAATAGTGAAAAAGTAGCCTCA
genomic: ATGATTGATCCTGGTCAAATTATTCCTTTCCATCAGgttgtttgga ... tgttttgcagGCTTTTGATGGGAAAAAATGGGAGAAGTTTAATAGTGAAAAAGTAGCCTCA
EST: gi|16106132|gb|BI893872.1|BI893872
EST:     ATGCATTCATAAACATGATTGATCCTGGNCAAATTATTCCTTTCCATCAG                         GCTTTTGATGGGAAAAAATGGGAGAAGTTTAATAGTGAAAAAGTAGCCTCA
genomic: ATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCATCAGgttgtttgga ... tgttttgcagGCTTTTGATGGGAAAAAATGGGAGAAGTTTAATAGTGAAAAAGTAGCCTCA