1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TACGAGGATGATGAAGGTGACAAAATTGTTCTTGCAACCAATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAGgtgaagatatttgcttctactggctttttcatgacactccaatttgctccatacattctaatataaagcatcttcgtgtttcag
species | Glycine max |
transcript | GLYMA08G00560.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAG GCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCAEST: gi|31312544|gb|CD397747.1|CD397747
genomic: ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAGgtgaagatat ... cgtgtttcagGCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCA
EST: ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAG GCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCAEST: gi|207733915|gb|GD710647.1|GD710647
genomic: ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAGgtgaagatat ... cgtgtttcagGCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCA
EST: ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAG GCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCAEST: gi|105633874|gb|DW247237.1|DW247237
genomic: ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAGgtgaagatat ... cgtgtttcagGCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCA
EST: ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAG GCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCAEST: gi|254333300|gb|GR850550.1|GR850550
genomic: ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAGgtgaagatat ... cgtgtttcagGCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCA
EST: ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAG GCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCA
genomic: ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAGgtgaagatat ... cgtgtttcagGCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGAGGATGATGAAGGTGACAAAATTGTTCTTGCAACCAATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAGgtgaagatatttgcttctactggctttttcatgacactccaatttgctccatacattctaatataaagcatcttcgtgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG