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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCGATGGTTGTTGAAGCAAGAAGTGTCGAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAGgtagtagtcatcaaaagttgatagttgattttgattaaattatctccagaatttaagcatctttgtctatgcag

Basic information

species Glycine max
transcript GLYMA07G40230.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 5'ss of exon 12
TCCTCGATGGTTGTTGAAGCAAGAAGTGTCGAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAGgtag-----tagtcatcaaaagttgatagttgattttgattaaattatctccagaatttaagcatctttgtctatgcag
 ||| |||||||| |||| ||||||||  | ||| |||||||||| || ||||||||||||||||| ||||| ||||||||||||||       | | |  ||||   ||    | ||  | | |   ||| |    | ||||| ||                 
CCCTAGATGGTTGCTGAAACAAGAAGTACCTAAGGTTGTCAAATCCATCAATAGGCAGTTGCGTGAAAAATCAATCAAGACAAAGgtgagctctttgactgcaaatcatgtctatcgacctggttctgattttagataaaatttcag-----------------

upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os02g07340.1 (Oryza sativa), 5'ss of exon 9
---------------TCCTCGATGGTTGTTGAAGCAAGAAGTGTCGAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAGgtag-----tagtcatcaaaagttgatagttgattttgattaaattatctccagaatttaagc----atctttgtctatgcag-----------------
                ||| |||||||| |||| ||||||||  | ||| |||||||||| || ||||||||||||||||| ||||| ||||||||||||||       | | |  ||||   ||    | ||  | | |   ||| |    | ||||| ||     | | || ||| |   |                 
CCTTTTGCTTTTCAGCCCTAGATGGTTGCTGAAACAAGAAGTACCTAAGGTTGTCAAATCCATCAATAGGCAGTTGCGTGAAAAATCAATCAAGACAAAGgtgagctctttgactgcaaatcatgtctatcgacctggttctgattttagataaaatttcaggttggagcattctctgtattgaaggagcttgttgttgt

upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 12
TCCTCGATGGTTGTTGAAGCAAGAAGTGTCGAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAGgtagtagtcatcaaaagttgat--agttgattttgattaaattatctccagaatttaagcatctttgtctatgcag
 ||||| |||||| |||||||||| ||  | ||  ||||||| ||||| || |||||||| ||||| ||||| ||||||||||||||   |||| |  |   ||  |  | || ||  |  |  |||| |       |||  |         | | | |||
CCCTCGCTGGTTGCTGAAGCAAGAGGTCCCAAAAGTTGTCAAGTCTATCAACAGGCAGTTACGTGAAAAATCAATCAAGACAAAGgt--cagtccttcagttttcctgcaattcatggttctggaattgtaagtctgattatattcctaacattt-tccag

upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G053644_T01 (Zea mays), 5'ss of exon 8
TCCTCGATGGTTGTTGAAGCAAGAAGTGTCGAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAGgtagtagtcatcaaaagttgat--agttgattttgattaaattatctccagaatttaagcatctttgtctatgcag
 ||||| |||||| |||||||||| ||  | ||  ||||||| ||||| || |||||||| ||||| ||||| ||||||||||||||   |||| |  |   ||  |  | || ||  |  |  || | |       |||  |         | | | |||
CCCTCGCTGGTTGCTGAAGCAAGAGGT-CCAAAAGTTGTCAAGTCTATCAACAGGCAGTTACGTGAAAAATCAATCAAGACAAAGgt--cagtccttcagttttcctgcaattcatggttctggaactgtaagtctgattatattcctaacattttt-cag

upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G386614_T01 (Zea mays), 5'ss of exon 1
TCCTCGATGGTTGTTGAAGCAAGAAGTGTCGAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAGgtagtagtcatcaaaagttgat--agttgattttgattaaattatctccagaatttaagcatctttgtctatgcag
 ||||| |||||| |||||||||| ||  | ||  ||||||| ||||| || |||||||| || || ||||| ||||||||||||||   |||| |  |   ||  |  | || ||  |  |  || | |       |||  |         | | | |||
CCCTCGCTGGTTGCTGAAGCAAGAGGTCCCAAAAGTTGTCAACTCTATCAACAGGCAGTTACGCGAAAAATCAATCAAGACAAAGgt--cagtccttcagttttcctgcaattcatggttctggaactgtaagtctgattatattcctagcattttt-cag

upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 13
lower sequence: AT2G02560.1 (Arabidopsis thaliana), 5'ss of exon 12
TCCTCGATGGTTGTTGAAGCAAGAAGTGTCGAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAGgta-gtagtcatcaaaagttgat----agttgattttgattaaattatctccagaatttaagcatctttgtctatgcag
|||   |||| |  ||||||||||||| || |||||||| ||||| |||||||||||  |||| || || ||| | |||||||||||| | |    | |||  ||  |      ||| ||    ||  || |  | || || ||       ||  | | || ||
TCCAAAATGGCTACTGAAGCAAGAAGTCTCAAAGATTGTGAAATCCATAAATAGGCAACTGCGCGAAAAGTCTGTTAAGACAAAGgtatgaaagtgttaaacattctttttggtttggttcctgtttgat-actttcataactt-----ctttcatatctgtag

upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 5'ss of exon 13
TCCTCGATGGTTGTTGAAGCAAGAAGTGTCGAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAGgtagtagtcatcaaaagttgatagttgattttgattaaattatctccagaatttaagcatctttgtc-tatgcag
|||  ||||||| ||||||||||||||| | || ||||| |||||||||||  | ||| |  | |||||| |||||||||| ||||||  |||   |  |  ||  |        |   | |  | | |    ||| || | |||   | || | |||||
TCCAAGATGGTTATTGAAGCAAGAAGTGCCAAAAATTGTTAAATCTATAAACCGACAGCTAAGAGAGAAAACTATCAAGACGAAGgtacgagtttcctgatattcttttaaaggatctgtgatgtaaccattggaaatttaacattcatttcatctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208119686|gb|GD920209.1|GD920209
EST:     TTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAG                         GTTGGAGCCTTTTCTGTTTTGAAAGAACTTGTGGTTGTATTGCCCAACTGT
genomic: TTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAGgtagtagtca ... gtctatgcagGTTGGAGCCTTTTCTGTTTTGAAAGAACTTGTGGTTGTATTGCCCAACTGT
EST: gi|207703777|gb|GD684423.1|GD684423
EST:     TTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAG                         GTTGGAGCCTTTTCTGTTTTGAAAGAACTTGTGGTTGTATTGCCCAACTGT
genomic: TTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAGgtagtagtca ... gtctatgcagGTTGGAGCCTTTTCTGTTTTGAAAGAACTTGTGGTTGTATTGCCCAACTGT