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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACCAGGCTGGGCCATACTAAACTGCGGGAGAATGCCATCATGATCACTAGTACCATCACTGTTGTACTCTTCAGCACATTGgttagacactaatcttcaattgataagcacggtttgtagtgattatgccatgttccaaatgttcaattttataccactggttgcttgaggatgagaaatt...

Basic information

species Glycine max
transcript GLYMA07G38160.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 12
TTTACCAGGCTGGGCCATACTAAACTGCGGGAGAATGCCATCATGATCACTAGTACCATCACTGTTGTACTCTTCAGCACATTGgttagacactaatcttcaattgataagcacggtttgtagtgattatgccatgttccaaatgttcaattttataccactggttgcttgaggat--gagaaatt------------------------------------
|| || |||   ||||| ||| |||| |     ||||| ||||||||||||||||| ||||||||||| || ||||||||  |||| ||    |     ||||   |  |  ||  | || | |    || |   | | |||| |   |   |   |   ||| |  ||  |  ||   | || ||                                    
TTCACAAGGTCAGGCCACACTCAACTCCCTAGTAATGCTATCATGATCACTAGTACAATCACTGTTGTTCTTTTCAGCACGATGgtaag---ttctctctcaaacaaacacaaccctgtgcaata--catccttcggttcaaagggagacagtatgaaagctgatccctgaacaattccacaagttggttctgataaaatcatctctcttatgttccctcag

upper sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 13
lower sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 13
TTTACCAGGCTGGGCCATACTAAACTGCGGGAGAATGCCATCATGATCACTAGTACCATCACTGTTGTACTCTTCAGCACATTGgttagacactaatcttcaattga-taagcacggtttgtagtga--ttatgccatgttccaaatgttcaattt-tataccactggttgcttgaggatgagaaatt
|| || |     || || || ||  | |  | ||| || ||||||||||| ||||||||||||||||| || ||||| ||  ||||  |   | |  |||   |  |    |   | ||  || |||  | |   |  |||     | | |||    ||  | | |   |         ||       
TTCACAACTTCAGGACACACCAAGGTTCTTGGGAACGCTATCATGATCACCAGTACCATCACTGTTGTTCTTTTCAGTACTGTGgtacgtttcaacactttgttcaaaccggtttgcttcctactgaagtcaaatcgggtttagcctatccaacacgtaacctaatctctaaccttttttgcag----