Sequence
atgc intronic sequence ATGC exonic sequenceTGACAATGGAGAGATACTAGGAGTTCATATTTTTGGTTTGCATGCAGCAGATCTCATCCATGAAGCATCCAATGCAATTGCATTAGGGACACGTATTCAGgtaaatttttctaccacatttatgtgtattggcatttagttactaataatagtcacaaagtcttcactcttatttatcctgcttgtttggtaaatttcaccgttttgtggtacaatgcag
Basic information
species | Glycine max |
transcript | GLYMA07G37050.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G37050.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G145595_T01 (Zea mays), 5'ss of exon 13
TGACAATGGAGAGATACTAGGAGTTCATATTTTTGGTTTGCATGCAGCAGATCTCATCCATGAAGCATCCAATGCAATTGCATTAGGGACACGTATTCAGgtaaatttttctaccacatttatgtgtat-tggcatttagttactaataatagtcacaaagt-cttcactcttatttatcctgcttgtttggtaaatttcaccgttttgtggtacaatgcag
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TGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGCTTGCATGCTGCTGATCTCATCCATGAGGCATCAAATGCCATTGCCCTTGGAACCCATGTGCAGgtgagtttgtcatgcattctgttagctgtgtagcatttctgcatttttgttctctgcataatgctaaacgcttaaatttgcacataaccttttgtaccctgcag------------------
upper sequence: GLYMA07G37050.1 (Glycine max), 5'ss of exon 13
lower sequence: AT3G16950.1 (Arabidopsis thaliana), 5'ss of exon 13
TGACAATGGAGAGATACTAGGAGTTCATATTTTTGGTTTGCATGCAGCAGATCTCATCCATGAAGCATCCAATGCAATTGCATTAGGGACACGTATTCAGgtaaatttttct---------accacatttatgtgta-ttggca--tttagttactaataatagtc----acaaagtct--tcactcttatttatcctgct-----tgtttggtaaatt-----tcaccgttttgtggtacaatgcag---------------------
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TGACAATGGTGAAATCTTAGGAGTTCATATATTTGGACTGCATGCAGCTGACCTTATCCATGAAGCTTCTAATGCGATTGCTCTAGGAACGCGTATTCAGgtaggatttcattgattagtgattactattgaatctagctcgtagcctttgatattgataatatcctacagcgaaatcaagtcatatacatagttcctgctgaaactactaaacgcattatttgtatctgtttcttgatcccctgcatgttttaatggtatctctgcag
upper sequence: GLYMA07G37050.1 (Glycine max), 5'ss of exon 13
lower sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 13
TGACAATGGAGAGATACTAGGAGTTCATATTTTTGGTTTGCATGCAGCAGATCTCATCCATGAAGCATCCAATGCAATTGCATTAGGGACACGTATTCAGgtaaatttttctaccacatttatgtgtattggcatttagttactaataatagtcacaaagtcttcactcttatttatcctgcttgtttggtaaatttcaccgttttgtggtacaatgcag
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TGACAATGGTGAAATCCTTGGAGTTCATATATTTGGATTGCATGCTGCTGATCTTATCCATGAAGCATCAAACGCGATTGCTTTAGGAACACGTATTCAGgtctggctgcaaacta-acctctct---ccggtattgatcataggactttagattgtgagcttt---ttttgtgtgtctttgtgtgatgataaatgcag---------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6913436|gb|AW394966.1|AW394966EST: GAAGCATCCAATGCAATTGCATTAGGGACACGTATTCAG GACATAAAATTTGCAGTTCATGCACATCCAACTTTGTCCGAGGTTCTTGAT
genomic: GAAGCATCCAATGCAATTGCATTAGGGACACGTATTCAGgtaaattttt ... tacaatgcagGACATAAAATTTGCAGTTCATGCACATCCAACTTTGTCCGAGGTTCTTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGACAATGGAGAGATACTAGGAGTTCATATTTTTGGTTTGCATGCAGCAGATCTCATCCATGAAGCATCCAATGCAATTGCATTAGGGACACGTATTCAGgtaaatttttctaccacatttatgtgtattggcatttagttactaataatagtcacaaagtcttcactcttatttatcctgcttgtttggtaaatttcaccgttttgtggtacaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC