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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCCATGTCTAACCCCACCATGAATGgtttgtttgtacaaggctcatcaagcactcataatttcttgataatgtttatgttttttcattgactatttttcttttttcttttttatatgtatatggggacag

Basic information

species Glycine max
transcript GLYMA07G08110.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G08110.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 13
GTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCCATGTCTAACCCCACCATGAATGgtttgtttgtacaaggctcatcaagcactcataatttcttgata-atgtttatgttttttcattgactatttttcttttttcttttttatatgtatatggggacag
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GTGCTTAAGGCCATGCGAGAATCCGATTCTACCAAACCTGCAATTTTTGCAATGTCAAATCCCACCATGAATGgtttgtgt-tgcaaaccctatcaagcacttacatttatttcaggcagacatatggcctc-cattgacatttttttctttgcatattctatg-gtgtag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574545|gb|CX547520.1|CX547520
EST:     TGTTTCAACAAAACCTGCTATCTTTGCCATGTCTACCCCCACCATGAATG                         CTGAGTGCACTGCTATTGATGCTTTTAAGCATGCTGGGGAAAATATGGTGT
genomic: TGTTTCAACAAAACCTGCTATCTTTGCCATGTCTAACCCCACCATGAATGgtttgtttgt ... atggggacagCTGAGTGCACTGCTATTGATGCTTTTAAGCATGCTGGGGAAAATATGGTGT