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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtgacatcagctttctgcttttatttcttcttactgtttcttgttaattttgttaaaattttcttgtgtcag

Basic information

species Glycine max
transcript GLYMA07G03890.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 13
ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagt--gcttgcatgaggtgacatc---agctttctgcttttattt--cttcttactgtttcttgttaattttgttaaaattttcttgtgtcag
 |||||||| |   ||||||| ||||| || | ||||||||| ||||||||||| |||||||| || ||  | || || || |||||||| ||||| ||||| |||    |   ||    ||| ||    || ||  | ||||||      ||| |||||    |   || |||||| |   | || ||       
TTTTGGTGGAATATTATTGGCGATGTGTTCCAGTGATTTCATTTGCTTTTATGACTGGGCTGACTGTAGACTAATACGCCGCATTGATGTGAATGTCAAAgtgagtcaaatattatctattgatatttatagattgatacttttaacgaatttcatactgaaa-taactagttttgtcactgtatttttag-----

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 13
ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtgacatcagctttctgcttttatttc-ttcttactgtttct--tgttaattttgttaaaa----ttttcttgtgtcag
|||||||||     || | || |||||  ||||||| ||||| ||||||||||||||||  |||||||| ||||| ||||| |||||||| ||||| || ||||  |  |   | |  |   || |  |     ||||| || | ||| | |  |||    ||||       | ||||    |||  ||||||   
ATTTGGTGGTGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTTTATGATTGGGTGGAATGCAGATTGATACGTCGAATTGATGTCAATGTGAAGgtaatggaatttgttacct--tattatttcaaacctttttttacattcatgccatttgaaatgttgtgccactcaaaacatgtttctttgtgtag-

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 14
ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtgacatcagctttctgcttttatttcttcttactgtttcttg--ttaattttgttaaaatt-----ttcttgtgtcag------
|| ||| ||     |  | || || ||  ||||||||||||| || |||||||| ||||| || ||||||||||| ||||| ||||| || ||||| ||||| |||  || | |  | |  || ||        |  | || | || ||||| ||| |||  ||||      |  ||||      ||||||| | |      
ATATGGGGGAGTATTGCTTGCTATATGTACAAATGATTTCATTTGTTTTTATGACTGGGCAGAGTGCAGGTTGATACGTCGAATTGACGTGAATGTAAAAgtgagtcgttacttttgctt-cagcaatggatacccatcatgtgtttttactcttttttgccttaacgccactggaattgattactcttgtgcctggtgtag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G141587_T02 (Zea mays), 5'ss of exon 13
ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaa--gtgcttg-catgaggtgacat-cagctttctgcttttatttcttcttactgtttcttgttaattttgtt-aaaattt----tcttgtgtcag-----------------------
|||||||||     || | || |||||  ||||||| ||||| ||||| ||||||||||| |||||||| ||||| ||||| || ||||| ||||| || ||||      ||| |||  | || | |  |  ||    | |   |||    || |  | |   | ||||    ||  | ||||    | ||||| ||                        
ATTTGGTGGAGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTCTATGATTGGGCAGAATGCAGATTGATACGTCGAATCGATGTCAATGTGAAGgtaatgacatttgacatttgttgccttataatttcaaacctggttttgcatttccaatgtgaaggtaatggcatttgacatttgaaatgttgtgccactgaagacatgtttctttgtgtag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 12
ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtgacatcagct-----ttctgcttttatttcttcttactgtttcttgttaattttgttaaaattttcttgtgtcag
 ||||||||     | ||||||||||| || | ||||||||||||||||||||| |||| ||| || ||  | || || || || ||||| |||||||| || | | |  | || |  |    |  | |     || ||  | ||     | | |  ||||  | ||||  || |    ||  |    |   ||
TTTTGGTGGGGTATTGTTGGCAATGTGTTCTAGTGATTTCATCTGCTTTTATGACTGGGTTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgaat-caagtattattttttcttgggtggaaattttgtatgtaaaatgtatga--gtttactattaaccttttctttatcatgcatttatag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 13
ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtgacatcagctttctgcttttatttcttcttactgtttcttgttaattttgttaaaattttcttgtgtcag---
 | ||||||     | ||||||||||| || | ||| ||||||||||||||||| |||||||| || ||  | || || || || ||||| |||||||| || |||     ||  | ||   ||      |  | |   | || |   |        ||  || |    ||    || || |||||      
TTATGGTGGGGTATTGTTGGCAATGTGTTCTAGTGACTTCATCTGCTTTTATGACTGGGCTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgagt-----ca-aaagtattatttttccttgggtggaaattttgtatgtatgagtttaatattaaccttttgtttatcatgtgtttatag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 13
ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgc---------atgaggtgacatcagctttctgcttttatttct--tcttactgtttcttgttaatttt-gttaaaattttcttgtgtcag---------------------------------------
 ||||| || ||  | || |||||||| || ||||||||||||||||| ||||||||||| ||||||||| ||||||  |  |||||||| |  || || |||     || |          |   | ||  | ||| |||  |  || ||||   |  |   ||| | | ||| |||  ||| ||| ||       | ||                                       
TTTTGGAGGAACCTTGTTAGCAATGTGTTCGAATGATTTCATCTGCTTCTATGATTGGGCCGAATGCAGGCTGATTCAACAAATTGATGTCACCGTAAAGgtatccaattaccttgtctctgttgtgagaagttagcattcatcacttttttccaattctgtcgttacattttattttcagttgaaagttgtcccaattagtgtctttactaactctttactcccatgaaaaatttgcag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 17
ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtgacatcagctttctgcttttatttcttcttactgtttcttgttaattttgttaaaattttcttgtgtcag--------------------------------------------------------------------------------------------------
 |||||||| ||  ||||| |||||||||||| |||||| || ||||| ||||||||||| ||||| ||||||||| | || || ||||||| ||| |||||||||||||  ||      |    | |  |  | || ||        || | ||    ||||  |||     ||| || || |   ||                                                                                                  
TTTTGGTGGGACGTTATTGACAATGTGCTCAAGTGATTTTATATGCTTCTATGATTGGGCGGAATGTAGGTTGATTAGGCGAATAGATGTTACTGTCAAAgtaagtgcttatataccagaagtagatccattagtttctacaagaaaatagt-ttataggttacgttttcagtaatatttttattggagaaatacaaaagagttccttatctgaaatttaaacgcaaaagcagattggtactgctcgcttattcacttttaacgtttttgtttattcaatgtttcag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 13
ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtgacatcagctttctgcttttatttcttcttactgtttcttgttaattttgttaa--aattttcttgtgt-cag-------------------------------------------------------------
 ||||| || ||  | || || ||||| |||| ||||||||||||||||||||||||||||||||| ||| ||||||  |||||||| || | ||| || |||    |     | |  || | |||| ||  ||     | ||    | |     | ||   |||  ||  ||  ||| |  |||  | |||                                                             
CTTTGGAGGAACCTTGTTAGCTATGTGTTCAAGTGATTTCATCTGCTTTTATGATTGGGCTGAATGTAGGCTGATTCAACGTATTGACGTCACTGTAAAGgtat---cccagttaacttggc-tcagtttattgtaagaagtttacttcaagacatatttggaatagtggaaactaatatcattgccttcagtttgaggttttcctcgtttgtttcttctctaatttgtagtgttgctacataacgtttgcag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 13
ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtgacatca-gctttctgcttttatttcttcttactgtttcttgttaattttgttaaa--attttcttgtgtcag
 | ||| ||  |  |  |||| || ||||||||||| ||||| || |||||||| |||||||| |||||||||||||| || |||||||| ||||| || | | || ||   |  || | || |||   || |    |||    |          |  | ||| ||||  ||      |||   | | ||||
TTATGGAGGGGCACTTCTGGCGATATGCTCAAATGACTTCATTTGTTTTTATGACTGGGCTGAGTGCAGGTTGATTCGGCGGATTGATGTCAATGTCAAGgcatgttctca-aaaagcttacttcacaattaccaggttttggccacagagaaactaatagttcatttctttgggtggtttcaatatttcag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 13
ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtgacatcagctttc-------tgcttttatttcttcttac--------------tgtttcttgttaattttgttaaaattttcttgtgtcag
 ||||| || ||| ||||||||||||||||||||||||| || || || ||||| ||||||||||||||| ||||||| || |||||||||||||| ||||||||  ||  ||||| |     |  |||  |       || ||| ||  |    | |              |||| ||| ||  |||| ||    |||   | | ||||
TTTTGGAGGAACTTTATTGGCAATGTGCTCAAATGATTTTATTTGTTTCTATGACTGGGCTGAATGCAGGCTGATTCGACGAATTGATGTTAATGTCAAAgtaagcactaacatgatggcctgttggctaccgtggtattgttttcatgccacactgcaggaattgattaaatgttccttttttcttttctttttttttcactatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254341657|gb|GR852794.1|GR852794
EST:     ATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAA                         AACCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACA
genomic: ATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgctt ... cttgtgtcagAACCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACA