Sequence
atgc intronic sequence ATGC exonic sequenceGAATGGATCATGGAGCACTGGGAAAAAAATTACTATATCAGTGCAATTGCTGGAGCTGTAAACGGGAGCTCGCTAGTAGTAATGTCTAAGGgttagtacctctaaagtatatattggcaatgtcaatttggcaaatttcaattttgttttccgctgactatgatcttggactccag
Basic information
species | Glycine max |
transcript | GLYMA07G01890.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G01890.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S66_174V6.1 (Physcomitrella patens), 5'ss of exon 13
GAATGGATCATGGAGCACTGGGAAAAAAATTACTATATCAGTGCAATTGCTGGAGCTGTAAACGGGAGCTCGCTAGTAGTAATGTCTAAGGgttagtacctctaaagtatatattggcaatgtcaatttgg-caaatttcaattttgttttccgctgactatgatcttggactccag-------------------------------------------------------------------------------------
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GAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCAATTGCTGGAGCTAATAATGGGAGCTCTTTGGTCGTCATGTCGAAAGgtattttattggatagtatcctttg---atgtatattgaatctattttcagagttgatctcaagggtgtttgatgatttattcttataatttgtcatttggagacctttttgtggttttctggctcttgttttacttgttgcatgatgtctcacggtgtttatttctgtag
upper sequence: GLYMA07G01890.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 5'ss of exon 13
GAATGGATCATGGAGCACTGGGAAAAAAATTACTATATCAGTGCAATTGCTGGAGCTGTAAACGGGAGCTCGCTAGTAGTAATGTCTAAGGgttagtacctctaaagtatat----attggcaatgtcaatttggcaaatttcaattttgttttccgctg--actatgatcttggactccag---------
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GAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAGgtatttcacccgatgttacatttagattaacactatcatttcatgcatatgtacttcaattttttatttttatcatgctgcttaatttttgtagatttatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22930150|gb|BU547289.1|BU547289EST: AGCTGTAAACGGGAGCTCGCTAGTAGTAATGTCTAAGG GCACACAGTATTTGCAACAATCATATAAAGTTAGTGACTCATTTCCTTTCA
genomic: AGCTGTAAACGGGAGCTCGCTAGTAGTAATGTCTAAGGgttagtacct ... tggactccagGCACACAGTATTTGCAGCAATCATATAAAGTTAGTGACTCATTTCCTTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATGGATCATGGAGCACTGGGAAAAAAATTACTATATCAGTGCAATTGCTGGAGCTGTAAACGGGAGCTCGCTAGTAGTAATGTCTAAGGgttagtacctctaaagtatatattggcaatgtcaatttggcaaatttcaattttgttttccgctgactatgatcttggactccag
- - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT