Sequence
atgc intronic sequence ATGC exonic sequenceGTTGGGGGGGCTAGTGAGGCCGAAGTTGGGGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCCACTAGAGCAGCTGTGGAAGAGGGAATTGTTCCGGgtaattcatttttccttctttctgatgggataatatgtatatagaagaggcaagggattgtactttgtattcttattcccattcttagaacactagctcatcaattaaagttaatatgtaattatttgaacaag
Basic information
species | Glycine max |
transcript | GLYMA07G01190.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G01190.1 (Glycine max), 5'ss of exon 13
lower sequence: AT3G13860.1 (Arabidopsis thaliana), 5'ss of exon 13
GTTGGGGGGGCTAGTGAGGCCGAAGTTGGGGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCCACTAGAGCAGCTGTGGAAGAGGGAATTGTTCCGGgtaattca--tttttccttctttctgatgggataatatgtatatagaagaggcaagggattgtactttgtattcttattcccattcttagaacactagctcatcaattaaagttaatatgtaattatttgaacaag
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GTGGGAGGGGCAAGTGAATCTGAAGTTGGAGAGAGAAAAGACAGAGTCACTGATGCTTTAAACGCCACAAGAGCAGCTGTAGAAGAAGGCATCATACCGGgtaatagaaattattcgcatcttctctctatttactctg-atatagctcacatgatg---tgcctttaacggaggaaatttcaaa--tag----------------------------------------------
upper sequence: GLYMA07G01190.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv09s0002g02240.t01 (Vitis vinifera), 5'ss of exon 13
GTTGGGGGGGCTAGTGAGGCCGAAGTTGGGGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCCACTAGAGCAGCTGTGGAAGAGGGAATTGTTCCGGgtaa--ttcatttttccttctttctgatgggataatatgtatatagaagaggcaag-ggattgtactttgtattcttattcccattcttagaacactagctcatcaattaaagttaatatgtaattatttgaacaag--------------------------
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GTTGGAGGGGCCAGTGAGGCAGAAGTTGGGGAAAGAAAAGATAGGGTCACAGATGCTTTGAATGCCACAAGAGCAGCTATTGAAGAGGGTATTGTACCTGgtaaagttcttactttgtcatcatcaatgttttcttcagtatatttcctgtgtacctgggttgtgttccctctttttggcaggtgccctttaata-tatatcatatatgcctattgaaatgatatcccttcaactataaccacaacatgattgttttctttag
upper sequence: GLYMA07G01190.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S44_339V6.1 (Physcomitrella patens), 5'ss of exon 13
GTTGGGGGGGCTAGTGAGGCCGAAGTTGGGGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCCACTAGAGCAGCTGTGGAAGAGGGAATTGTTCCGGgtaattcatttttccttctttctgatgggataatatgtatatagaagaggcaagggattgtactttgtattcttattcccattcttagaacactagctcatcaattaaagttaatatgtaattatttgaacaag
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ATCGGAGGAACTAGTGAAGTGGAAGTCAATGAGAAAAAAGATCGTGTAACGGATGCCTTGAATGCCACTAAAGCAGCTGTGGAAGAGGGCATTGTACCCGgtaa-------------ggttcca--ggatcattttctctgtaacaaacacagttgattgtctcttccacgttcacttctggtttcggtgaggtaattgatgaagttagctgctt-------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193466908|gb|FK430747.1|FK430747EST: AGATGCTTTAAATGCCACTAGAGCAGCTGTGGAAGAGGGAATTGTTCCGG GTGGTGGAGTTGCTCTCCTATATGCTAACCAAAGTCTTGGATAACCTTCAA
genomic: AGATGCTTTAAATGCCACTAGAGCAGCTGTGGAAGAGGGAATTGTTCCGGgtaattcatt ... tttgaacaagGTGGTGGAGTTGCTCTCCTATATGCTA-CCAAAGTCTTGGATAACCTTCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGGGGGGGCTAGTGAGGCCGAAGTTGGGGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCCACTAGAGCAGCTGTGGAAGAGGGAATTGTTCCGGgtaattcatttttccttctttctgatgggataatatgtatatagaagaggcaagggattgtactttgtattcttattcccattcttagaacactagctcatcaattaaagttaatatgtaattatttgaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG