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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCCTGGTTGGGTACAGGAGTGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGTGCTTTCCATGgtatgcattatctgcttaaaattaatctttttcttccaactggcatgtaatgatgccaattttcaattcgtttgctatatgttctgcaaatcatgttgtt...

Basic information

species Glycine max
transcript GLYMA06G43820.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G43820.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os01g54910.1 (Oryza sativa), 5'ss of exon 13
GGGCCTGGTTGGGTACAGGAGTGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGTGCTTTCCATGgtatgcattatctgcttaaaattaatctttttcttccaactggcatgta-atgatgccaattttcaattcgtttgctatatgttctgc-aaatcatgttgtt--------------------------------
|||  |||| || | ||   |  | ||||||||    |||||||||||||| || |||||||| |||||||| |||||||  | |||  ||||     |  |  ||     |||| || | |  ||  |    |  |  |   ||      ||     |  | | ||  | |||                                  
GGGTTTGGTGGGATTCAAAGGAATATTCAGCAGCTTTACACGTGGAACTGGGTTTATGCATCGCGCTTTCCAGGgtatgctatttcttattaagtcctagatgatttccttaactcgcctatgcatttttttgaagtaaaccacgccattgatgccaccaactagattttattgagagtatttgaccttggtttctctatgattgcag

upper sequence: GLYMA06G43820.1 (Glycine max), 5'ss of exon 13
lower sequence: AT2G31060.1 (Arabidopsis thaliana), 5'ss of exon 12
GGGCCTGGTTGGGTACAGGAGTGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGTGCTTTCCATGgtatgca--ttatctgcttaaaattaatctttttcttccaactggcatgtaatgatgccaattttcaat--tcgtttgctatatgttctgcaaatcatgttgtt
 || ||||||||||||||  ||||||| ||||| |||||||| ||||||||||||||||||||||||||||   ||||| |  || ||| |||  | |||  ||    || |   | |  || ||   ||     || |||||  |   ||  |  ||   |  ||| ||| ||||  
AGGTCTGGTTGGGTACAGATGTGTGTTTAGCAGCGACACACGAGGAACTGGATTCATGCATCGTGCTTTCCTAAgtatgaaacttttctacttgcattta--ctgcaactccagtccgctatttatccatctattttctcaatgttttcttctttcataagcatcaattca-gttga-

upper sequence: GLYMA06G43820.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 5'ss of exon 13
GGGCCTGGTTGGGTACAGGAGTGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGTGCTTTCCATGgtatg-------cattatctgcttaaaatta-atctttttcttccaactggcatgtaatgatgccaattttcaattcgtttgctatatgttctgcaaatcatgttgtt
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||    |||||       || |||   |||  | ||   | ||||| ||     |  ||  |     || || ||     |    |||| || || | ||   |||    |   
GGGCCTGGTTGGTTACAGGAGTGTGTTTAGCAGTGACACACGTGGCACTGGATTTATGCATCGTGCTTTCTTAAgtatgtttatttcactattccctttcagttttgtgttttttttttccttttcaatttcccttgtcacttcatggtc---ttgcaat-tggtatg-ggatcgcaat---