Sequence
atgc intronic sequence ATGC exonic sequenceAACAGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAGACAGTACCTGGCTAACGTGGCACTAAAAATCAATGTCAAGgtctgttattatcaaatgctcaatcgtattttactatccaaagtgacagggtggctacatgctacactgaaatattgttttcattctcttaactcattcttttatttgtaattattattttcatttcatttgcttaaataaaggatttattcttgtag
Basic information
species | Glycine max |
transcript | GLYMA06G23920.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G23920.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 5'ss of exon 13
AACAGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAGACAGTACCTGGCTAACGTGGCACTAAAAATCAATGTCAAGgtctgttattatcaaatgctcaatcgtattttactatccaaagtgacagggtggctacatgc-tacactgaaatattgttttcattctcttaactcattcttttatttgtaattattattttcatttcatttgcttaaataaaggatttattcttgtag
||| || |||||||||| || ||||| ||| | || |||||||| |||||||||| | ||||||||||| || || |||| ||||||||||| ||||| | ||||| || | | | | | | | || || ||||| | | || ||| || || || | | | ||| | || | || | ||
AACTGACTTGGGGTTGATATCACAATGTTGCTTAACCAAACATGTTTTCAAGATCAGCAAGCAGTACCTGGCAAATGTCTCACTTAAAATCAATGTTAAGgt--------accaaatactta--taaaccaagcagttaatact--tagcttgtctacacaaatgtagtgtaatgcagtaagcagacttgcagcattgctaatgccttgcatttcggagttgtgatacag-----------------------------
upper sequence: GLYMA06G23920.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 13
AACAGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAGACAGTACCTGGCTAACGTGGCACTAAAAATCAATGTCAAGgtctgttattatcaaatgctcaatcgt-attttactatccaaagtgacagggtggctacatgctacactgaaatattgttttcattctcttaactcattcttttatttgtaattattattttcatttcatttgcttaaataaaggatttattcttgtag
||||||||||||||||||||||| ||||| ||||| ||| |||| | |||||| | | ||||||||||| |||||| |||| ||||||||||| ||||||||| | || || | | ||| ||||| ||| | | | | | | || | || ||||| |||| | || | || | ||| || ||||
CACAGATCTGGGGTTGATTTCTCAGTGCTGTCTTACTAAAAATGTCTACAAGATTAGCAACCAGTACCTGGCAAACGTGTCACTTAAAATCAATGTTAAGgtctgtccagactgaaacttctgtggcgattctactacttaaaaata------gattgcttattgca--aagttaatgtttc----ctctaagcttggt------ttcgggatttttctttttccccag------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208267157|gb|GE064680.1|GE064680EST: AGATCAATAGACAGTACCTGGCTAACGTGGCACTAAAAATCAATGTCAAG ATGGGAGGAAGAAACACAGTACTTTTGGATGCTTTAAGTTGGAGGATTCCA
genomic: AGATCAATAGACAGTACCTGGCTAACGTGGCACTAAAAATCAATGTCAAGgtctgttatt ... attcttgtagATGGGAGGAAGAAACACAGTACTTTTGGATGCTTTAAGTTGGAGGATTCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACAGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAGACAGTACCTGGCTAACGTGGCACTAAAAATCAATGTCAAGgtctgttattatcaaatgctcaatcgtattttactatccaaagtgacagggtggctacatgctacactgaaatattgttttcattctcttaactcattcttttatttgtaattattattttcatttcatttgcttaaataaaggatttattcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - AGATCA