Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATATTATACATATTGATTTTGGCTTCATGCTTTCTAATTCACCCGGTGGTGTTAATTTTGAAAGTGCACCTTTCAAATTAACCCGAGAACTTCTTGAGgtaaaattgagacagtttatcggtacctatttttgagtgtccattcgatcatttagacatttactagcttttctctgtacaataacagaaataatgtgattgtgccag

Basic information

species Glycine max
transcript GLYMA06G15820.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15820.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv04s0044g01210.t01 (Vitis vinifera), 5'ss of exon 12
CCATATTATACATATTGATTTTGGCTTCATGCTTTCTAATTCACCCGGTGGTGTTAATTTTGAAAGTGCACCTTTCAAATTAACCCGAGAACTTCTTGAGgtaaaattgagacagtttatcggtacctatttttgagtgtccattcgatcatttagacatttactagcttttctctgtacaataacagaaataatgtgattgtgccag
 ||||| |||||||||||||||||||||||||| || || ||||| |||||||| |||||||| |||||||| || |||||||| || |||||||||||||||| ||    | |  ||| | |    ||  ||| ||  | | ||| || ||| ||    || ||   ||    ||| ||  | |   | | | ||   |||||  ||
TCATATAATACATATTGATTTTGGCTTCATGCTCTCCAACTCACCTGGTGGTGTGAATTTTGAGAGTGCACCATTTAAATTAACTCGGGAACTTCTTGAGgtaatatactaatatatta-cagcttgtaggtttaagc-ttctttctat-attgagtttgttcctcaattgatcctgaac--tgatcaagaca-tgaacttgtggtag

upper sequence: GLYMA06G15820.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S113_110V6.1 (Physcomitrella patens), 5'ss of exon 12
CCATATTATACATATTGATTTTGGCTTCATGCTTTCTAATTCACCCGGTGGTGTTAATTTTGAAAGTGCACCTTTCAAATTAACCCGAGAACTTCTTGAGgtaaaattg--agaca-gtttatcggtacctatttttgagtgtccattcgatcatt-tagacatttactagcttttctctgtacaataacagaaataatgtgattgtgccag-----
 || || || || || || ||||| || ||||| || ||||| || |||||||| || ||||||||||| ||||||||| | || || || |||||||||||||  ||   | |||     |||     | ||| |  |||| || ||     |||  |   |   |||   |   |   |     | ||     |     ||| ||  ||      
TCACATCATTCACATCGACTTTGGTTTTATGCTCTCCAATTCTCCTGGTGGTGTCAACTTTGAAAGTGCTCCTTTCAAACTTACGCGCGAGCTTCTTGAGgtaaccttagtaaacacaacaatctcagtcaattctacagtggccgtttctgtattgcaattaaggactgattgaacatggggacctgactctt-tgtccggatcgtttcaaactag

upper sequence: GLYMA06G15820.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S263_81V6.1 (Physcomitrella patens), 5'ss of exon 12
CCATATTATACATATTGATTTTGGCTTCATGCTTTCTAATTCACCCGGTGGTGTTAATTTTGAAAGTGCACCTTTCAAATTAACCCGAGAACTTCTTGAGgtaaaatt-gagacagtttatcggtacctatttttgagtgtccattcgatcatttagacatttactagcttttctctgtacaataacagaaataatgtgattgtg-ccag
 || ||||| |||||||| ||||| |  ||||| || ||||| || |||||||| |||||||||||||| ||||||||| | || || || |||||||||||||  || || |||     || |    |  | |  |||   |  | |   |||   |   | | |   |  ||   |     | ||   | |    |  ||    ||||
ACACATTATCCATATTGACTTTGGTTATATGCTCTCCAATTCTCCTGGTGGTGTGAATTTTGAAAGTGCTCCTTTCAAACTTACACGCGAGCTTCTTGAGgtaacttttgaaacaaaacttctgggtgtgctgtatagtactcgcttgtgtattacaa--gtgattgattcatcataggggtctgaccttactggattatttcaatccag

upper sequence: GLYMA06G15820.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ26597 (Selaginella moellendorffii), 5'ss of exon 12
CCATATTATACATATTGATTTTGGCTTCATGCTTTCTAATTCACCCGGTGGTGTTAATTTTGAAAGTGCACCTTTCAAATTAACCCGAGAACTTCTTGAGgtaaaattgagacagtttatcggtacctatttttgagtgtccattcgatcatttagacatttactagcttttctctgtacaataacagaaataatgtgattgtgccag
        | ||||||||||| || |||||||| |||||||| || ||||| ||||| ||||| |  || ||||| ||||| || || ||||   | |||| ||   ||   | | |    | | |  | ||  |  ||| | |       |||   |||| ||                                            
------CGTCCATATTGATTTCGGTTTCATGCTGTCTAATTCTCCTGGTGGAGTTAACTTTGAGAACGCCCCTTTTAAATTGACTCGGGAACAATTAGAGGCAAG--Tgtcgctgct-gctgttgcacacttgcgcttgtacttgaacgtctttttccattgacag------------------------------------------