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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTGGCCCCTATGCCTACTGCATCTACTAGCCAGATTCTTGGAAATAACGAGTGTTTTGAACCATATACTTCAAACATATACAGTCGTAGAGTTTTAAGgtttgctttttcatcccattttttctgtcttggtgtactattgcctcatgatcctatcttactgggctactgtttgtttctag

Basic information

species Glycine max
transcript GLYMA06G15350.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 5'ss of exon 13
TCGTGGCCCCTATGCCTACTGCATCTACTAGCCAGATTCTTGGAAATAACGAGTGTTTTGAACCATATACTTCAAACATATACAGTCGTAGAGTTTTAAGgtttgctttttcatcccattttttctgtcttggtgtactattgcct-catgatcctatcttactgggctactgtttgttt--ctag--------------
|  | || || |||||||| || |||||||| || |||||||| || ||||| || ||||||||||| || ||||||||||||||||| ||||||||||||| |||   |     || | ||    ||      ||  | |||  | |||||   | |   | |  | |   ||||   |  ||||              
TTATTGCTCCAATGCCTACCGCTTCTACTAGTCAAATTCTTGGCAACAACGAATGCTTTGAACCATACACCTCAAACATATACAGTCGGAGAGTTTTAAGgtctgcaaatctgctccttgttaaacgttcaaccgttgttttggttacatgaatttttgccagtctgttttggtttacatgactagtttccttttggcag

upper sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 13
TCGTGGCCCCTATGCCTACTGCATCTACTAGCCAGATTCTTGGAAATAACGAGTGTTTTGAACCATATACTTCAAACATATACAGTCGTAGAGTTTTAAGgtttgctttttcatcccattttttctgtcttggtgtactattgcctcatgatcctatcttactgggctactgtttgtttctag
| || || || ||||||||||| || ||||| ||||||||||| || || || || |||||||| ||||| || ||||||||||| ||  | ||| |||||||||    | ||  |  || ||  ||     |   ||||  |     || |  |   | | |  | |    ||  |||| ||
TTGTTGCTCCAATGCCTACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAATGCTTTGAACCTTATACATCTAACATATACAGCCGGCGGGTTCTAAGgtttgtaactaca--ctgttcttagtgctcgtgctcactacag----gtgcttatgattgattttgtt-taattcttttccag

upper sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G304362_T01 (Zea mays), 5'ss of exon 13
TCGTGGCCCCTATGCCTACTGCATCTACTAGCCAGATTCTTGGAAATAACGAGTGTTTTGAACCATATACTTCAAACATATACAGTCGTAGAGTTTTAAGgtttgc--tttttcatcccattttttctgtcttggtgtactattgcct-catgatcctatcttactgggcta-ctgtttgt--ttctag
| || || || ||||| ||||| || ||||| ||||||||||| || || |||||||||||||| || || || || |||||||||||  | ||| |||||| ||      | |  || | || ||  |  |   |  | | |    | ||||  |  || | | |   ||  || ||| |  ||| ||
TTGTTGCTCCAATGCCCACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaacaatactccctacttctttagggtgtttacattgtgatgtacatgtgcacatgtgattaatctttctattttttgttccag

upper sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 13
TCGTGGCCCCTATGCCTACTGCATCTACTAGCCAGATTCTTGGAAATAACGAGTGTTTTGAACCATATACTTCAAACATATACAGTCGTAGAGTTTTAAGgtttgctttttcatcccattttttctgtctt----ggtgtactattgcc-tcatgatcctatcttactgggctactgtttgtttctag-
| || || |||||||| ||||| || || ||||||||||||||||| || ||||| ||||| || |||||||| || || |||||| | |||||| ||||||||| |||   | || |   | |   | ||    | | || || |    |    |||  |   | ||       ||||| ||| |   
TTGTAGCACCTATGCCCACTGCTTCAACCAGCCAGATTCTTGGAAACAATGAGTGCTTTGAGCCCTATACTTCCAATATCTACAGTAGGAGAGTTCTAAGgtttgttttgctaccctaacctgttcattttctaagatttagtacttttgttgccatctaagtctcctctttccttgtttctttgtcag

upper sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ14283 (Selaginella moellendorffii), 5'ss of exon 12
TCGTGGCCCCTATGCCTACTGCATCTACTAGCCAGATTCTTGGAAATAACGAGTGTTTTGAACCATATACTTCAAACATATACAGTCGTAGAGTTTTAAGgtttgctttttcatcccattttttctg-tcttggtgtactattgcctcatgatcctatcttactgggctactgtttgtttctag
| || || || ||||| || ||||| || ||||| ||||||||||| |||||||||||||| || ||||| || || || |||| |||  | ||| |||||| ||| || |      ||    | || |  |  |||     |||| ||                                   
TTGTTGCTCCAATGCCGACAGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAGgtatgccttctttctgtatcagctgtgatacttatgt-tgcctgccacag----------------------------------

upper sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ20162 (Selaginella moellendorffii), 5'ss of exon 1
TCGTGGCCCCTATGCCTACTGCATCTACTAGCCAGATTCTTGGAAATAACGAGTGTTTTGAACCATATACTTCAAACATATACAGTCGTAGAGTTTTAAGgtttgctttttcatcccattttttctgtcttggtgtactattgcctcatgatcctatcttactgggctactgtttgtttctag
| || || || ||||| || ||||| || ||||| ||||||||||| |||||||||||||| || ||||| || || || |||  |||  | ||| |||||| ||| || |  | |  | |   ||||       ||||  ||   | || | |                             
TTGTTGCTCCAATGCCGACGGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACGCTCGACGCGTTCTAAGgtatgccttct--ttctgtatcagctgtg-----atacttatgttgcctgctacag---------------------------

upper sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ20157 (Selaginella moellendorffii), 5'ss of exon 12
TCGTGGCCCCTATGCCTACTGCATCTACTAGCCAGATTCTTGGAAATAACGAGTGTTTTGAACCATATACTTCAAACATATACAGTCGTAGAGTTTTAAGgtttgctttttcatcccattttttctgtcttggtgtactattgcctcatgatcctatcttactgggctactgtttgtttctag
| || || || ||||| || ||||| || ||||| ||||||||||| |||||||||||||| || ||||| || || || |||| |||  | ||| |||||| ||| || |  | |  | |   ||||       ||||  ||   | || | |                             
TTGTTGCTCCAATGCCGACAGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAGgtatgccttct--ttctgtatcagctgtg-----atacttatgttgcctgctacag---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208153189|gb|GD949202.1|GD949202
EST:     GAGTGTTTTGACCCATATACTTCAAACATATACAGTCGTAGAGTTTTAAG                         TGGTGAATTTAGTTTGTTGTGAACAAAGCATCTTCTTC
genomic: GAGTGTTTTGAACCATATACTTCAAACATATACAGTCGTAGAGTTTTAAGgtttgctttt ... ttgtttctagTGGTGAATTT-GTT-GTTGTGAACAA-GCATCTTCTTC
EST: gi|207810107|gb|GD780881.1|GD780881
EST:     TGTTTTGAACCATATACTTCAAACATATACAGTCGTAGAGTTTTAAG                         TGGTGAATTTGTTGTTGTGAACAAGCATCTTCTTCATGACTTGACTGAAAT
genomic: TGTTTTGAACCATATACTTCAAACATATACAGTCGTAGAGTTTTAAGgtttgctttt ... ttgtttctagTGGTGAATTTGTTGTTGTGAACAAGCATCTTCTTCATGACTTGACTGAAAT