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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAGGCTTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGgtatgtctttgacaaaatttcaaatgttgggtatataaagtggtcatcttttttttcctgggtatgatgtagacttacctctgtgatatctatgttttgg...

Basic information

species Glycine max
transcript GLYMA06G13330.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os01g46700.1 (Oryza sativa), 5'ss of exon 12
-------------------------TGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAGGCTTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGgtatgt--ctttgacaaa---atttcaaatgttgggtatataaagtggtcatcttttttttcctgggtatgatgtagacttacctctgtgatatctatgttttgg
                         |||||||| |  ||       | ||| || || || |||||||||| ||||||||||||||||||    ||  |||||||||||||||| |||||||||||||| |  |  ||||| |    ||||||| ||     ||                                                                  
ATGCCAGATAGCAGTTCATCAGGAATGCTATGGCGTGAGGGGAAAGCAAGACTTCACCTCATGGgtttgtagggcttgtgaaacacctgatcaaaaaagggagtgttgtctttgccctgtaaaaggtatataccactgacatatatgtttcaaaagtattccat------------------------------------------------------------------

upper sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G170412_T01 (Zea mays), 5'ss of exon 12
TGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAGGCTTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGgtatgtctttgacaaaatttcaaatgttgggtatataaagtggtcatcttttttttcctgggtatgatgtagacttacctctgtgatatctatgttttgg--
|| ||||| |  ||   |   | ||| ||||| || |||||||||  ||||||||||| ||||||    ||| ||||||| |||||||| |||||||||||||  || |||   |  |   || ||||  |||  |    |  ||      |   | |    |   | | | |   |    | |   ||  |    |||   
TGTTATGGTGTGAGGGGTAAGCAAGACTTTACTTCATGGGTTTGTCGGGCTTGTGAAAAACCTGAGCAAAAGAGGGAGTGCTGTCTTTGCCCTGTAAAAGgta-atccttgtgcatttgataactgttctgtaattcctttcttcggtaactgggtgc-atttggaaagaaaaggcaatagtattggatgaacacattgata

upper sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 13
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 12
TGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAGGCTTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGgtatgtctttgacaaaatttcaaatgttgggtatataaagtggtcatcttttttttcctgggtat-gatgtagacttacctctgtgatatctatgttttgg
||||||||  | ||||| || || || || ||||| ||||| || || || || || |||||||| ||||| || |||||||| || |||||||||||||||||||||||       ||||  || ||||  |   | | |   |||  | || |       |||  |     |||    || || | |  | |  ||   
TGCTATGGGACGAGAAACGTTCGTGACTTCACATCATGGGTCTGCAAAGCCTGCGAGACACCTGAGATCAAACGAGAGTGTTGCCTCTGTCCTGTAAAAGgtatgtcttttgttgtgtttcttat-ttggtgaagcatatttaacatagtcttgtcttattttattaacaactactgcagtcagtaaaaagtgttcttcac

upper sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 13
lower sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 12
TGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAGGCTTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGgtatgtctttgacaaaatttcaaatgttgggtatataaagtggtcatcttttttttcctgggtatgatgtagacttacctctgtgatatctatgttt-tgg
|||||||| || ||| |||| || ||||| || || ||||| ||||| || || || | ||| || ||||||||||||||||| || || ||||||||||||   | | | |   |  ||||  | ||    ||| | |   | || |  |   |   |   ||| ||  |      || || || | ||  || |  | |
TGCTATGGCGCTAGACATGTTCGTGATTTCACCTCATGGGTCTGTAAAGCATGCGAGAGACCAGATATCAAGCGGGAGTGTTGCCTCTGCCCTGTAAAAGgtggctttataaagtatattcagctttttcacataaacatatggcaccactgcctat-taactat-atccattggctccgctatgttgtcactgatgatag

upper sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 13
TGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAGGCTTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGgtatgtctttgacaaaatttcaaatgttgggtatataaagtggtcatcttttttttcctgggtatg-atgtagacttacctctgtgatatcta-tgttttgg
|| ||||| ||||||||||| || ||||| || || |||||||| |  || ||||||||||||||  |  ||||||||||||| ||||||||||||||||||||||     | |        ||| |   ||     || || | | | ||   || || |  ||  || |  |   |  | | | ||   || ||||||  
TGTTATGGGGCAAGAAATGTTCGGGATTTCACTTCATGGGTTTGCAGAGCATGTGAAACACCTGATGTTGAGCGGGAGTGTTGCCTTTGTCCTGTAAAAGgtatgttcccaagattgagaggaatctcaagttatagaaatgttaaaccttgacttgcttgtcatttatatttatgcagttttataatgaataatgtttt--