Sequence
atgc intronic sequence ATGC exonic sequenceATATTAATATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTCTGTGTTAAGgtaatatggtatacacagtaattacaattgcttatggtgaaaactttaagtttgtggatgccaacaagtcattattatatgatcattattcattatattcataatattttctttttgtaacgtcatttacatgtaaaaaaatag
Basic information
species | Glycine max |
transcript | GLYMA06G10060.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G10060.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv18s0001g07500.t01 (Vitis vinifera), 5'ss of exon 13
ATATTAATATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTCTGTGTTAAGgtaatatggtatacacagtaattacaattgcttatggtgaaaactttaagtttgtggatgccaacaagtcattattatatgatcattattcattatattcataatattttctttttgtaacgtcatttacatgtaaaaaaatag
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ATTTTGGTTTCATGCTTTGTGAAAACCCCACGTTTTGAAGAGTACCTTTGTGTGAAGgtaat-tgcagtttattatgattggatatcattatg-tagatgctt--aatacatgtatgctgct--gtgacccttacattg-caaaataatatctatttctga-atc------------------------------------
upper sequence: GLYMA06G10060.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv18s0001g07520.t01 (Vitis vinifera), 5'ss of exon 10
ATATTAATATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTCTGTGTTAAGgtaatatggtatacacagtaattacaattgcttatggtgaaaactttaagtttgtggatgccaacaagtcattattatatgatcattattcattatattcataatattttctttttgtaacgtcatttacatgtaaaaaaatag
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ATCTTGGTATCTTGCTTTGTGAAAACCTCACGTATTGAAGAGTACCTGTGTGTCAAGgtaa-gtgcagttcattataatca-gatatcattgagtatatgcttcatacatgtatgcagctgtgagcttttatgttgcaa--aatagtatttat-ttctgaat---------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9566106|gb|BE475544.1|BE475544EST: TATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTCTGTGTTAAG GAGGCAATCCTTTTGGATCTTCTCAGAGTGGTCAGTCATCATCGAGCCAGG
genomic: TATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTCTGTGTTAAGgtaatatggt ... aaaaaaatagGAGGCAATCCTTTTGGATCTTCTCAGAGTGGTCAGTCATCATCGAGCCAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATTAATATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTCTGTGTTAAGgtaatatggtatacacagtaattacaattgcttatggtgaaaactttaagtttgtggatgccaacaagtcattattatatgatcattattcattatattcataatattttctttttgtaacgtcatttacatgtaaaaaaatag
- - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - TGAAGA