1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAGgttttttgttttttttcttgcctcataatatttgctttttaaagttatattactgtatcttattttatttgtatcttttttaattcttatcatgaattttttcattggagatttttaatgccattttagttctgtcattgtgttcaataatgttagcggcatgattatatttgaaaacctgtatgtag
species | Glycine max |
transcript | GLYMA06G07380.3 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAG GTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATAEST: gi|192321089|gb|FK013549.1|FK013549
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAGgttttttgtt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATA
EST: TCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAG GTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATAEST: gi|7691963|gb|AW760080.1|AW760080
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAGgttttttgtt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATA
EST: TCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAG GTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATAEST: gi|15815238|gb|BI787513.1|BI787513
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAGgttttttgtt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATA
EST: TCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAG GTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATAEST: gi|17519672|gb|BM188714.1|BM188714
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAGgttttttgtt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATA
EST: CCCACCACCGCGTGGAAGAACTCCTCCAAG GTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATA
genomic: CCCACCACCGCGTGGAAGAACTCCTCCAAGgttttttgtt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAGgttttttgttttttttcttgcctcataatatttgctttttaaagttatattactgtatcttattttatttgtatcttttttaattcttatcatgaattttttcattggagatttttaatgccattttagttctgtcattgtgttcaataatgttagcggcatgattatatttgaaaacctgtatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC