Sequence
atgc intronic sequence ATGC exonic sequenceGATGGAAAAGTTTTACCAGATGGTCCTGTTGTTATTTCCCCTGATGGACTTTTTCCCTCTCTATATCGAGAAGgtaacaactctgcttgtctttgttttctgctgcttcttattgttccctttcttccaagttgtacaactttttttgtttttccttctttttttatccaggg...
Basic information
species | Glycine max |
transcript | GLYMA06G04230.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G04230.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv18s0001g10680.t01 (Vitis vinifera), 5'ss of exon 9
GATGGAAAAGTTTTACCAGATGGTCCTGTTGTTATTTCCCCTGATGGACTTTTTCCCTCTCTATATCGAGAAGgtaacaactctgcttgtctttgttttctgctgcttcttattg-ttccctttcttccaagttgtacaactttttttgtttttccttctttttttatccaggg
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GATGGAAAGGCTTTGCCAGATGGGCCAGTTGTTATTTCCCCTGATGGACTTTTTCCTTCTCTCTTTCGAGAAGgtatttggtgtatatgcactgtttctcagatctcacacataaattccatttatttatcaatctgccattaactttgtatggaaagggtttactgcttttt-
upper sequence: GLYMA06G04230.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S2_272V6.1 (Physcomitrella patens), 5'ss of exon 7
GATGGAAAAGTTTTACCAGATGGTCCTGTTGTTATTTCCCCTGATGGACTTTTTCCCTCTCTATATCGAGAAGgtaacaactctgcttgtctttgttttctgctgcttct-tattgttccctttcttccaagttgtacaactttttttgtttttccttctttttttatccaggg
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GATGGTGAAGCACTTCCAGATGGACCAGTTGTTATTTCTCCTGATGGACTCTTTCCCTCTCTTTATCGCGAAGgttagtatgtgacctattctgaaatactattgtttttgtgatgttgactcag-------------------------------------------------
upper sequence: GLYMA06G04230.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S39_351V6.1 (Physcomitrella patens), 5'ss of exon 7
GATGGAAAAGTTTTACCAGATGGTCCTGTTGTTATTTCCCCTGATGGACTTTTTCCCTCTCTATATCGAGAAGgtaacaactctgcttgtctttgttttctgctgcttct-tattgttccctttcttccaagttgtacaac--tttttttgtttttccttctttttttatccaggg---------------------------------------------------------
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GACGGTGAAGCACTACCAGATGGACCAGTTGTCATTTCTCCTGATGGACTCTTTCCCTCCCTCTATCGCGAAGgtgattatgtgccctattttgaaatgctgttgggtttgtatcggttacttactta-agattgcatgatcattcttttgacatccttgcagaacttatctactcttttatttgattgaatgctcagagcttggattgattagtgtgtgagtggttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27426468|gb|CA937988.1|CA937988EST: TCCTGTTGTTATTTCCCCTGATGGACTTTTTCCCTCTCTATATCGAGAAG TTATTAGGAGGGTTCCTCATGAATTCAAAATTGCATGCTTAGAG
genomic: TCCTGTTGTTATTTCCCCTGATGGACTTTTTCCCTCTCTATATCGAGAAGgtaacaactc ... ctatttccagTTATTAGGAGGGTTCCTCATGAATTCAAAATTGCATGCTTAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGGAAAAGTTTTACCAGATGGTCCTGTTGTTATTTCCCCTGATGGACTTTTTCCCTCTCTATATCGAGAAGgtaacaactctgcttgtctttgttttctgctgcttcttattgttccctttcttccaagttgtacaactttttttgtttttccttctttttttatccaggg
- - - - - - - - - - - - - - - - - - - - - GATGGA