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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGAAGATGTCAATTCTGCTGGGGGTATCCCAGATGAATCTTGGAATCATAATGAGTTACTTTAATGCAAAATACTTCGAAAACAACATAAATATCTGgtaatagcaaaaaacaactttagtttaatgaacattgtctgtggtgtatggtgttcatcaattggtttttcgatgatgcctcag

Basic information

species Glycine max
transcript GLYMA06G03040.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G03040.1 (Glycine max), 5'ss of exon 13
lower sequence: AT2G21410.1 (Arabidopsis thaliana), 5'ss of exon 13
AGATGAAGATGTCAATTCTGCTGGGGGTATCCCAGATGAATCTTGGAATCATAATGAGTTACTTTAATGCAAAATACTTCGAAAACAACATAAATATCTGgtaatag--caaaaaacaactttagtt-taatgaacattgtctgtggtgtatggtgttcatcaattggtttttcgatgatgcctcag-
||||||| |||||||||||  | || ||  | || ||||| || |||||||||||||| | |||||||||||||| |||| |||      |||| || |||| |     |||    |  |  | ||  | | | || || ||   | | |    |  ||  |  |||  |  ||    |||  ||   
AGATGAAAATGTCAATTCTTATTGGAGTTGCACAAATGAACCTCGGAATCATAATGAGCTTCTTTAATGCAAAATTCTTCAAAAGTGCTGTAAACATATGgtgagtattcaattttctgcccttgtcattacgtac-ttctcccagttcttcaattatctgcccttgtctgatctcacatggttccag

upper sequence: GLYMA06G03040.1 (Glycine max), 5'ss of exon 13
lower sequence: AT4G39080.1 (Arabidopsis thaliana), 5'ss of exon 13
AGATGAAGATGTCAATTCTGCTGGGGGTATCCCAGATGAATCTTGGAATCATAATGAGTTACTTTAATGCAAAATACTTCGAAAACAACATAAATATCTGgtaatagcaaaaaacaactttagtttaatgaacattgtctgtggtgtatggtgttcatcaattggtttttcgatgatgcctcag-----------------------
||||||| |||||||| || || || || || || ||||| || |||||||||||||| ||||||||||| | || |||| ||   |   ||||||| ||||     ||    | |  ||  |   |  |     | ||| |       | |  | |   | |     |  |       |||||                       
AGATGAAAATGTCAATCCTTCTCGGAGTTTCTCAAATGAACCTCGGAATCATAATGAGCTACTTTAATGCTAGATTCTTCAAATCAAGTGTAAATATATGgtgggttcagttgatattttctgaccatagcgtgctctctctctctccagttccttaaacagtaaaaatcagtcatcatctcagcatctaattttgcgggcttgcag

upper sequence: GLYMA06G03040.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv18s0001g13410.t01 (Vitis vinifera), 5'ss of exon 13
AGATGAAGATGTCAATTCTGCTGGGGGTATCCCAGATGAATCTTGGAATCATAATGAGTTACTTTAATGCAAAATACTTCGAAAACAACATAAATATCTGgtaatagcaaaaaa-caactttagtttaatgaacattgtctgtggtgtatggtgttcatcaattggtttttcgatgatgcctcag---------------
|||||||||||||||| || || || ||| ||||||||||||||||||||||| |  | || || ||||| | || ||| | ||| ||| ||||||| |||| |   | |     |||||  | | |    | ||||  |  | | | |   | |  |    | |  |  | ||  |    |                  
AGATGAAGATGTCAATCCTACTTGGAGTAGCCCAGATGAATCTTGGAATCATATTAGGCTATTTCAATGCGACATTCTTTGGAAATAACCTAAATATTTGgtgagctctatgggtcaactgaattcttgcaagcattcaccatagagcaccttttataattgtagaatggttgacaaacatttgactgattcttacgata

upper sequence: GLYMA06G03040.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S6_159V6.1 (Physcomitrella patens), 5'ss of exon 12
AGATGAAGATGTCAATTCTGCTGGGGGTATCCCAGATGAATCTTGGAATCATAATGAGTTACTTTAATGCAAAATACTTCGAAAACAACATAAATATCTGgtaatagcaaaaaacaactttag----tttaatgaacattgtctgtggtgtatggtgttcatcaattggtttttcgatgatgcctcag---------------------------------------------
|||||||||||||||||||| ||||| | || ||||||||||| || ||  || |||| ||||| || || | ||||||   || |    |  || | |||| |    |   | || ||||      |||  |      ||  | ||    |  || ||||   | | | | | |  |  |  |  ||                                             
AGATGAAGATGTCAATTCTGTTGGGGATTTCTCAGATGAATCTGGGCATTCTATTGAGCTACTTCAACGCTAGATACTTTCGAAGCGCTCTTGATGTTTGgttagtttatctagcatctttcagatatttgtttgcttctgattttgtctaactgtcttcaaataatagctgtgcttttgtatcgtagcgctcagatcctaacagaagtttatgtttgatgaaacgaactcag