1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCTCTGTATGACGCATTGATGAGGCAAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggcaagtctatcttttgaataaagttaaaaccttgactcaatgtatcaaattttttatatttctgtttcctgtgttttaatcag
species | Glycine max |
transcript | GLYMA06G01260.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|214005189|gb|DB985493.1|DB985493
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|193384250|gb|FK349304.1|FK349304
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAA-GAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|208255826|gb|GE052805.1|GE052805
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|209697051|gb|BW667041.1|BW667041
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|207786644|gb|GD757917.1|GD757917
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|193443534|gb|FK404674.1|FK404674
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAA-GAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGEST: gi|208130170|gb|GD926725.1|GD926725
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAG
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|193618453|gb|FK572563.1|FK572563
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|57575650|gb|CX548625.1|CX548625
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|207688414|gb|GD672641.1|GD672641
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: CAAGAAGAAGCCAAGTTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGEST: gi|193327758|gb|FK296383.1|FK296383
genomic: CAAGAAGAAGCCAAG-TTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAG
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|193431457|gb|FK396083.1|FK396083
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGACATTGTGCAGAEST: gi|254335757|gb|GR847285.1|GR847285
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|193472879|gb|FK438316.1|FK438316
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTCGCGG AAAAAGAAGCTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|193339589|gb|FK304866.1|FK304866
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|208282493|gb|GE074249.1|GE074249
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|254335758|gb|GR847286.1|GR847286
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|193679873|gb|FK621945.1|FK621945
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGEST: gi|193343864|gb|FK311540.1|FK311540
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAG
EST: TTGACAGACAAGAAGAAGCCAAGTTGCGG -AAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|193391557|gb|FK354146.1|FK354146
genomic: TTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAA-GATGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|193440534|gb|FK405491.1|FK405491
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGEST: gi|208239470|gb|GE041342.1|GE041342
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAG
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAEST: gi|208209242|gb|GE005122.1|GE005122
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTGTATGACGCATTGATGAGGCAAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggcaagtctatcttttgaataaagttaaaaccttgactcaatgtatcaaattttttatatttctgtttcctgtgttttaatcag
- - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC