1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatccttaataacactattttcatttctgttgctattattcaacccagatgcatgaagtcccctcatgtaaaattgctttgggccggaagcatgga...
species | Glycine max |
transcript | GLYMA05G37850.3 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|18722327|gb|BM523396.1|BM523396
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|12691343|gb|BG157679.1|BG157679
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|22929331|gb|BU546470.1|BU546470
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|13480024|gb|BG509367.1|BG509367
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|7692080|gb|AW760195.1|AW760195
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|9900602|gb|BE609570.1|BE609570
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|192303374|gb|FG997432.1|FG997432
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: TTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|193378502|gb|FK344675.1|FK344675
genomic: TTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|22929227|gb|BU546366.1|BU546366
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|192303006|gb|FG997022.1|FG997022
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|213588137|gb|DB979215.1|DB979215
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|120494105|gb|EH222272.1|EH222272
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|19453403|gb|BM954813.1|BM954813
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|214004560|gb|DB985339.1|DB985339
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|192299708|gb|FG990032.1|FG990032
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: ATATGACGGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|192303005|gb|FG997021.1|FG997021
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCATEST: gi|209707542|gb|BW665001.1|BW665001
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
EST: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAG GTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
genomic: ATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatcct ... tctatggcagGTTCCTGTAACTGGTCTGAAGACACCATTCCGAGACGGTTTGCTGAAGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGGGTTATTGTACGATGAACTTTCTCTAAAAAGTGTTTTGGATATGACAGCTGATTGGACTCCAGAAGAAAGACAAATGTTAAGGAATAAGgtggaatccttaataacactattttcatttctgttgctattattcaacccagatgcatgaagtcccctcatgtaaaattgctttgggccggaagcatgga
- - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA