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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgccatatcatcttattatgttttgatatcttattgatctatcttgattgttaactgtttgtctttcag

Basic information

species Glycine max
transcript GLYMA05G32070.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 13
TTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgccatatcat-cttattatgttttgatatcttattgatctatcttgattgttaactgtttgtctttcag
||||||| || ||||| ||||| || ||||| |||||||||||||| ||||| || ||||| || ||||| ||||| || ||||||||  | |||||||||||| |  | | |   | |||| |     |    |    |      |||  |   | ||   |  || | || |||
TTGTTGCTCCAATGCCTACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAATGCTTTGAACCTTATACATCTAACATATACAGCCGGCGGGTTCTAAGgtttgtaactacactgttcttagtgctcgtgctcactacaggtgcttatgattgattttgtttaattcttttccag

upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G304362_T01 (Zea mays), 5'ss of exon 13
TTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgccatatcatcttattat-----gttttgatatcttattg---atctatcttgattgttaa-ctgtttgtctttcag-----
||||||| || ||||| ||||| || ||||| |||||||||||||| |||||||||||||| || || || |||||||| ||||| ||  | |||||||||| | |  | |||    ||  || |     || || | ||  |  ||   || |       |  |||| || | | | |||        
TTGTTGCTCCAATGCCCACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaacaatactccctacttctttagggtgtttacattgtgatgtacatgtgcacatgtgattaatctttctattttttgttccag

upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G340527_T01 (Zea mays), 5'ss of exon 13
TTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgccata----tcatcttatta---tgttttgatat---cttattgatctatct-tgattg--ttaactgtttgtctttcag
||||||| || ||||| ||||| || ||||| |||||||||||||| |||||||| ||||| || || || |||||||| ||||| ||  | |||||||||| | |  | |||    | |  |  |||   |||||  || |   ||||    |  || | ||||||   |  || ||| | || |||
TTGTTGCTCCAATGCCCACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAGTGCTTTGAACCCTACACATCTAATATTTACAGTCGACGGGTTCTAAGgtctgtaacaatactctttacttctttagagtgtttacattttgacttacatgtgcatatatgattgatctttctatttttattccag

upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 13
TTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttatt-----gccata------tcatcttattatgttttgatatcttattg--atctatcttgattgttaact-gtttgtctttcag
|||| || |||||||| ||||| ||||| |||||||||||||| || |||||||| |||||||| |||||||| |||||||||||  | ||||||||||||||| ||      || ||      |||| || | |  ||| |   | || |||  |||||  |    | ||  || |||| | | ||||
TTGTAGCACCTATGCCCACTGCTTCAACCAGCCAGATTCTTGGAAACAATGAGTGCTTTGAGCCCTATACTTCCAATATCTACAGTAGGAGAGTTCTAAGgtttgttttgctaccctaacctgttcattttctaagatttagtacttttgttgccatctaagtctcctctttccttgtttctttgtcag

upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ14283 (Selaginella moellendorffii), 5'ss of exon 12
TTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgccatatcatcttattatgttttgatatcttattgatctatcttgattgttaactgtttgtctttcag
||||||| || ||||| || |||||||| ||||| |||||||| || || |||||||||||||| ||||| || ||||| ||||  ||  | ||||||||||    |||| | |     ||| | | | |||||  |   |   ||  |                          
TTGTTGCTCCAATGCCGACAGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAGgta---tgccttctttctgtatca-gctgtgatacttatgttgcctgccacag----------------------

upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ20162 (Selaginella moellendorffii), 5'ss of exon 1
TTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgccatatcatcttattatgttttgatatcttattgatctatcttgattgttaactgtttgtctttcag
||||||| || ||||| || |||||||| ||||| |||||||| || || |||||||||||||| ||||| || ||||| |||   ||  | ||||||||||    |||| | |     ||| | | | |||||  |   |   ||                             
TTGTTGCTCCAATGCCGACGGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACGCTCGACGCGTTCTAAGgta---tgccttctttctgtatca-gctgtgatacttatgttgcctgctacag----------------------

upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ20157 (Selaginella moellendorffii), 5'ss of exon 12
TTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgccatatcatcttattatgttttgatatcttattgatctatcttgattgttaactgtttgtctttcag
||||||| || ||||| || |||||||| ||||| |||||||| || || |||||||||||||| ||||| || ||||| ||||  ||  | ||||||||||    |||| | |     ||| | | | |||||  |   |   ||                             
TTGTTGCTCCAATGCCGACAGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAGgta---tgccttctttctgtatca-gctgtgatacttatgttgcctgctacag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51345093|gb|CO985826.1|CO985826
EST:     GAGTGTNNNGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAG                         TGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
genomic: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgcc ... tgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
EST: gi|193313221|gb|FK279176.1|FK279176
EST:     GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAG                         TGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
genomic: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgcc ... tgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
EST: gi|192296534|gb|FG991640.1|FG991640
EST:     GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAG                         TGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
genomic: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgcc ... tgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
EST: gi|58018661|gb|CX705403.1|CX705403
EST:     GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAG                         TGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
genomic: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgcc ... tgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
EST: gi|58024594|gb|CX711335.1|CX711335
EST:     GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAG                         TGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
genomic: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgcc ... tgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
EST: gi|192293903|gb|FG986112.1|FG986112
EST:     GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAG                         TGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
genomic: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgcc ... tgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
EST: gi|51335204|gb|CO979070.1|CO979070
EST:     ACAGCCGCAGAGTTCTAAG                         TGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
genomic: ACAGCCGCAGAGTTCTAAGgtttattgcc ... tgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT