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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAGgtatacataaacgagtggatgactggaagttattttgtttatacttatttcattagtgtctttatattagtattatggatgttggcattgtctttcttaa...

Basic information

species Glycine max
transcript GLYMA05G30430.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30430.2 (Glycine max), 5'ss of exon 13
lower sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 13
TGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAGgtatacataaacgagtggatgactggaagttattttgtttatacttatttcattagtgtctttatattagtattatggatgttggcattgtctttcttaa
||| || ||||| ||| ||||| | |||||||| || || || ||||||||||| || ||||| || ||||| ||||| || |||||||| |||||||||||| |  |  |  |  ||    ||| || | | |    | ||  | ||  ||  | |    || |     |  | |  || |||| ||  | || |    
TGCATCAGTCAACTCTATTCACTTGTTCCCCAAAAACACAGAACACATTGTTGTGTGCAACAAGACATCATCTATATACATTATGACACTCCAAGGACAGgtaaatttccagcaacggtctcctgcaaatcagt---gtcattgtcatgccaaaactaagattgttcacatgct-tctatattggaatccttttgcag--

upper sequence: GLYMA05G30430.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv17s0000g08930.t01 (Vitis vinifera), 5'ss of exon 13
TGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAGgtatacataaacgagtggatgactggaagttattttgtttatacttatttcattagtgtctttatattagtattatggatgtt-ggcattgtctttcttaa-----
 || ||||| |||   |||||  |||||||||| ||||| || || ||| |||| |||||||  || ||||| |||||  | |||||||||||||||||||||   ||       |   |   |||||  ||   ||      |  | |  ||| ||   ||||  |  ||  ||| ||   | || | |  |   || |      
CGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGACCATATTATTGTGTGTAACAGGACATCATCAATATACCTTATGACACTTCAAGGACAGgtacttattctt---tttctttgtggaaactagggtgagatagcacact--atttgttatttta-gtctgttgtatagacaataggaaataaccaactgatgaggg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208117434|gb|GD919132.1|GD919132
EST:     TTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAG                         GTTGTGAAGAGCTTCTCATCTGGTAAAAGAGAAGGCGGAGACTTTGTTGCA
genomic: TTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAGgtatacataa ... caattgatagGTTGTGAAGAGCTTCTCATCTGGTAAAAGAGAAGGCGGAGACTTTGTTGCA
EST: gi|193366687|gb|FK332423.1|FK332423
EST:     TATATATCATGACACTTCAAGGACAG                         GTTGTGAAGAGCTTCTCATCTGATAAAAGAGAAGGCGGAGACTTTGTTGCA
genomic: TATATATCATGACACTTCAAGGACAGgtatacataa ... caattgatagGTTGTGAAGAGCTTCTCATCTGGTAAAAGAGAAGGCGGAGACTTTGTTGCA
EST: gi|207778029|gb|GD747094.1|GD747094
EST:     TTTTGTTAACTAAAACGTCATCCATATATATCATGACACTTCAAGGACAG                         GTTGTGAAGAGCTTCTCATCTGGTAAAAGAGAAGGCGGAGACTTTGTTGCA
genomic: -TTTG-TAAC-AAAACGTCATCCATATATATCATGACACTTCAAGGACAGgtatacataa ... caattgatagGTTGTGAAGAGCTTCTCATCTGGTAAAAGAGAAGGCGGAGACTTTGTTGCA
EST: gi|213619985|gb|DB976961.1|DB976961
EST:     TTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAG                         GTTGTGAAGAGCTTCTCATCTGGTAAAAGAGAAGGCGGAGACTTTGTTGCA
genomic: TTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAGgtatacataa ... caattgatagGTTGTGAAGAGCTTCTCATCTGGTAAAAGAGAAGGCGGAGACTTTGTTGCA
EST: gi|193668798|gb|FK609032.1|FK609032
EST:     TTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAG                         GTTGTGAAGAGCTTCTCATCTGGT
genomic: TTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAGgtatacataa ... caattgatagGTTGTGAAGAGCTTCTCATCTGGT