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TTTGATTCTAAGAGGTGCAAATGACCATATGCTTGATGAGATGGATAGAGCTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACGgtatcctgcatacgtagctttcatcctactttggttgaaatcaaaatgttgctttagattaagtttttcaaatgatgtctttttattttgccttccctgtgcttgattttttaatatataaaattcag
species | Glycine max |
transcript | GLYMA05G29870.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACG GTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAGEST: gi|57575315|gb|CX548290.1|CX548290
genomic: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACGgtatcctgca ... taaaattcagGTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAG
EST: TCTGCATGATGCATTGTCCA-TGNTCAAGAGAACTCTTGAATCAAATACG GTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAGEST: gi|193585735|gb|FK542101.1|FK542101
genomic: TCTGCATGATGCATTGTCCATTG-TCAAGAGAACTCTTGAATCAAATACGgtatcctgca ... taaaattcagGTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAG
EST: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACG GTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAGEST: gi|26045589|gb|CA783128.1|CA783128
genomic: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACGgtatcctgca ... taaaattcagGTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAG
EST: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACG GTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAGEST: gi|7147203|gb|AW509125.1|AW509125
genomic: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACGgtatcctgca ... taaaattcagGTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAG
EST: CTCTGCATGATGCATTGTCCATTGTCAAGAGAGCTCTTGAATCAAATACG GTGGTAACTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTEST: gi|13482485|gb|BG511828.1|BG511828
genomic: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACGgtatcctgca ... taaaattcagGTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGT
EST: GCATGATGCATTGNTCCATGTGTCAATGAGAAGCTCTTGAATCAAATACG GTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAGEST: gi|57575079|gb|CX548054.1|CX548054
genomic: GCATGATGCATTG-TCCAT-TGTCAA-GAGAA-CTCTTGAATCAAATACGgtatcctgca ... taaaattcagGTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAG
EST: CTTTGCATGATGCATNGTCCATNGTCAAGAGAACTCTTGAATCAAATACG GTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAGEST: gi|24136371|gb|BU926881.1|BU926881
genomic: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACGgtatcctgca ... taaaattcagGTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAG
EST: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACG GTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAGEST: gi|58018371|gb|CX705113.1|CX705113
genomic: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACGgtatcctgca ... taaaattcagGTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAG
EST: CTCTGCATGATGCATTGTCCATGGTCAAGAGAACTCTTGAATCAAATACG GTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAGEST: gi|20448998|gb|BQ253122.1|BQ253122
genomic: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACGgtatcctgca ... taaaattcagGTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAG
EST: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACG GTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAGEST: gi|58016681|gb|CX703423.1|CX703423
genomic: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACGgtatcctgca ... taaaattcagGTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAG
EST: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACG GTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAGEST: gi|58016928|gb|CX703670.1|CX703670
genomic: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACGgtatcctgca ... taaaattcagGTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAG
EST: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACG GTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAG
genomic: CTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACGgtatcctgca ... taaaattcagGTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGATTCTAAGAGGTGCAAATGACCATATGCTTGATGAGATGGATAGAGCTCTGCATGATGCATTGTCCATTGTCAAGAGAACTCTTGAATCAAATACGgtatcctgcatacgtagctttcatcctactttggttgaaatcaaaatgttgctttagattaagtttttcaaatgatgtctttttattttgccttccctgtgcttgattttttaatatataaaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA