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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTGCTGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAGgtataagtgtcaattgcatcaaatgaagatactgtttcattgctaacctttttttccctcccctaattggctctag

Basic information

species Glycine max
transcript GLYMA05G00820.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G00820.1 (Glycine max), 5'ss of exon 13
lower sequence: AT5G07740.1 (Arabidopsis thaliana), 5'ss of exon 12
GATCTGCTGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAGgtataagtgtcaattgcatcaaatgaagatactgtttcattgctaacctttttttccctcccctaattggctctag-----------------------------------------
|  |||||||||||||||||||||| ||| | |  ||  | | ||| || |||||| ||||||| || ||||| || |||||||||||||||||||||  | || ||||   |  | |  | |||   |||||  || | |   || ||             ||| ||  |                                         
GCGCTGCTGTTGGATTCAAGTTGGACAGTTTATCGAAATTAAGTGATACACGTGCTGCTAACAGCAAGATGACTCTCATGCATTATCTTTGCAAGgta--aatgacaatcaaaa-agagcaggatctagtttc--tgatgaaggttattataaaaagtggtctggatcaggagagatacataattctgaaactctcatctttctttttccag

upper sequence: GLYMA05G00820.1 (Glycine max), 5'ss of exon 13
lower sequence: AT5G07650.1 (Arabidopsis thaliana), 5'ss of exon 23
GATCTGCTGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAGgtataagtgtcaattgcatcaaatgaagatac--tgtttcattgctaacctttttttccctcccctaattggctctag
|   ||| || |||||||||||| | ||| | || |   | |  |||||  ||||  ||||||| || ||||| || ||||||||||||||||||||| || |  |||| | |  ||   |  || |  | | |   ||| | | |        |  |  | |||  | |   
GCAGTGCCGTGGGATTCAAGTTGAAAAGTTTATTGATATTAAGCGACACATGTGCACCTAACAGCAAGATGACTCTCATGCATTATCTTTGCAAGgtaaaacta-caatcgaaagaacgaagcatgcattatatttatgcgatcatgaaaccatcctcttttattttcccag-

upper sequence: GLYMA05G00820.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv17s0000g06640.t01 (Vitis vinifera), 5'ss of exon 14
GATCTGCTGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAGgtataagtgtcaattgcatcaaatgaagatactgtttcattgctaacctttttttccctcccctaattggctctag------------------------
| ||||| ||||||||||||||||| ||||||||||| |||||||| || ||||| |||||||| || |||||||| |||||||||||||| ||||||     ||    |        |     |  ||  ||     | |  | ||| |    |  |  | |  ||                            
GTTCTGCGGTTGGATTCAAGTTGGACAGTCTTTTAAAACTCACTGATACACGTGCCTCTAACAGCAAGATGACACTTATGCATTATCTTTGTAAGgtaaggtggttgcatattatgtttccttgtggtgcctctgaaatcaggtctttctggtgcagcagaatatcttatactctaaatttctttctggtgcaac