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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAAGCTTGCGAAAGACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGgtatgtctttgacaaaatttcaaatgtttggtatataaagtgatcatctttttttttccaggtatgatgtagactcgcctctctgtgatatctatttttt...

Basic information

species Glycine max
transcript GLYMA04G41500.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os01g46700.1 (Oryza sativa), 5'ss of exon 12
-------------------------TGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAAGCTTGCGAAAGACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGgtatgt--ctttgacaaa---atttcaaatgtttggtatataaagtgatcatctttttttttccaggtatgatgtagactcgcctctctgtgatatctatttttt
                         |||||||| |  ||       | ||| || || || ||||||||||  ||||| |||| ||||||    ||  |||||||||||||||| |||||||||||||| |  |  ||||| |    ||||||| || |   ||                                                                  
ATGCCAGATAGCAGTTCATCAGGAATGCTATGGCGTGAGGGGAAAGCAAGACTTCACCTCATGGgtttgtagggcttgtgaaacacctgatcaaaaaagggagtgttgtctttgccctgtaaaaggtatataccactgacatatatgtttcaaaagtattccat------------------------------------------------------------------

upper sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 13
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 12
TGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAAGCTTGCGAAAGACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGgtatgtctttgacaaaatttcaaatgtttggtata-taaagtgatcatctttttttttccaggtatgatgtagactcgcctctctgtgatatctatttttt--
||||||||  | ||||| || || || || ||||| ||||| || ||||| ||||| | |||||| ||||| || |||||||| || |||||||||||||||||||||||       ||||   | ||||||  |  | | | | |||  | || | |     ||| |   |    |  |  || || | |  | || ||   
TGCTATGGGACGAGAAACGTTCGTGACTTCACATCATGGGTCTGCAAAGCCTGCGAGACACCTGAGATCAAACGAGAGTGTTGCCTCTGTCCTGTAAAAGgtatgtcttttgttgtgtttc--ttatttggtgaagcatatttaacatagtcttgtcttattttatta-acaactactgcagtcagtaaaaagtgttcttcac

upper sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 13
lower sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 12
TGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAAGCTTGCGAAAGACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGgtatgtctttgacaaaatttcaaatgtttggtatataaagtgatcatctttttttttccaggtatgatgtagactcgcctctctgtgatatctatttttt---
|||||||| || ||| |||| || ||||| || || ||||| |||||||| ||||| ||||| || ||||||||||||||||| || || ||||||||||||   | | | |   |  ||||  | |||   ||| | |     || |  |   | |      |  || |  | | ||  | || || | ||  |  |     
TGCTATGGCGCTAGACATGTTCGTGATTTCACCTCATGGGTCTGTAAAGCATGCGAGAGACCAGATATCAAGCGGGAGTGTTGCCTCTGCCCTGTAAAAGgtggctttataaagtatattcagctttttcacataaacatatggcaccactgcctatt----aactatatccattggctccgctatgttgtcactgatgatag

upper sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 13
TGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAAGCTTGCGAAAGACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGgtatgtctttgacaaaatttcaaatgtttggtatataaagtgatcatctttttttttccaggtatgatgtagactcgcctctctgtgatatctatttttt-
|| ||||| ||||||||||| || ||||| || || |||||||| | ||| || |||| ||||||  |  ||||||||||||| ||||||||||||||||||||||     | |        ||| |   ||     || || | | | ||   || |  |  ||  | ||     ||   | | | ||   || | ||| 
TGTTATGGGGCAAGAAATGTTCGGGATTTCACTTCATGGGTTTGCAGAGCATGTGAAACACCTGATGTTGAGCGGGAGTGTTGCCTTTGTCCTGTAAAAGgtatgttcccaagattgagaggaatctcaagttatagaaatgttaaaccttgacttgcttgtcatt-tatatttatgcagttttataatgaataatgtttt