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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAACCTGAGACATCGAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatatgttggagcatctactctttggctttcataggaattgcttgaatgttcttatatatggcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattacag

Basic information

species Glycine max
transcript GLYMA04G38360.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38360.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os02g06300.1 (Oryza sativa), 5'ss of exon 13
TTTGAACCTGAGACATCGAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatatgttggagcatctactctt-tggctttcataggaattgcttgaatgttcttatatatggcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattacag
|||||||| ||  | || ||||||||||| |||||||| |||||||| ||||| || |||||||||||||| ||||| |||||||  |||   |    ||    | ||  |   | |||||  |   |||    ||   | | || | |   |  | |  ||||  ||   ||  |                                     
TTTGAACCAGAATCTTCAAGTGCCATGGGTTTTGGCTTCAGATGTGGATTTCTCGGTCTTCTTCATATGGAGATTGTGCAGgttcttataatctacttcactctcactagtccatctcatatta-cagctatggtgacttgaaatttcgacaacataatgttctctttg--ttcag-------------------------------------

upper sequence: GLYMA04G38360.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G003157_T02 (Zea mays), 5'ss of exon 4
TTTGAACCTGAGACATCGAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatatgttggagcatctactctttggctttcataggaattgcttg-aatgttcttatatatggcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattacag
|||||||| ||  | || ||||||||||| |||||||| ||||||||||| || || ||||| ||||||||||| ||||||||||  | |         |||||||   |||  ||||| | | | |||   |||      |  ||||||    ||||||||   |  ||| |    | | |  |  ||| || ||                 
TTTGAACCAGAATCTTCTAGTGCCATGGGGTTTGGCTTCAGATGTGGGTTCCTTGGTCTTCTCCATATGGAAATAGTTCAGgttcttaca---------atctact---tgg--ttcatggcagtagctcataataaaaccac-tatggc----ttgacatttctac-aacat----agcttttttctatttt-cag----------------

upper sequence: GLYMA04G38360.1 (Glycine max), 5'ss of exon 13
lower sequence: AT5G08650.1 (Arabidopsis thaliana), 5'ss of exon 13
TTTGAACCTGAGACATCGAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcga-atatgttggagcatctactctttggctttcataggaattgcttgaatgttc-ttatatatggcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattacag
||||| ||||| || ||||||||||||||||||||||||||||| |||||| |||| ||||| || ||||||||||| |||||  || || | | |       |  |||   |  ||  | |    |   ||| ||    ||   ||||  | |   || |     |  || ||   | |                                  
TTTGAGCCTGAAACTTCGAGTGCCATGGGATTTGGCTTTAGATGCGGGTTTTTGGGTCTTCTCCACATGGAAATTGTGCAGgtcagatatgtttcgctcttcttgttctaaagtgtttttggtgcgtctctgactgaaaatttcctatgcaacagaagatagagaaaagaaattcatagat---------------------------------

upper sequence: GLYMA04G38360.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 13
TTTGAACCTGAGACATCGAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatatgttggagcatctactctttggctttcataggaattgcttgaatgttcttatatatggcataattgacattctgattaactttggaaacctggtc---ttatcttacaagttctttacattacag
||||| ||||||||||| ||||||||||| ||||||||||| ||||||||  |||| ||||| |||||||||||  ||||||| |  ||   ||  |     | ||||   |||    ||| ||||         || ||  ||  |  || | |    | ||||  || ||  | || |    |   || ||| | ||||| |  |  || |||
TTTGAGCCTGAGACATCCAGTGCCATGGGCTTTGGCTTTAGGTGTGGGTTCTTGGGTCTTCTCCATATGGAAATCATTCAGgtccacatgctttcaactgcat-ctctgctgctcctttagtaatt---------ttatttgatcagtaattaatagattgctgacaaatttcaggaatcacaacacgttctctgataagtt-tacatcttgcag

upper sequence: GLYMA04G38360.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ20933 (Selaginella moellendorffii), 5'ss of exon 13
TTTGAACCTGAGACATCGAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatatgttggagcatctactctttggctttcataggaattgcttgaatgttcttatatatggcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattacag
|||||||| || |  |||||||| ||||||||||| ||| ||||||| ||||| |||||| | || |||||||| || |||||   ||||  |||| |||| | |  | |   |||| || |  | || ||||    |||| |                                                                     
TTTGAACCGGAAAGTTCGAGTGCAATGGGATTTGGATTTCGATGTGGATTTCTTGGCCTTTTGCACATGGAAATAGTACAGgt---aata-attggcgcattttcattct---tttcttaagc-tggcatgaa-acgcttacag--------------------------------------------------------------------

upper sequence: GLYMA04G38360.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ32321 (Selaginella moellendorffii), 5'ss of exon 13
TTTGAACCTGAGACATCGAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatatgttggagcatctactctttggctttcataggaattgcttgaatgttcttatatatggcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattacag
|||||||| || |  |||||||| ||||||||||| ||| ||||||| ||||| |||||| | || |||||||| || |||||   ||||  |||| |||| | |  | |   |||| || |  ||  |  || | |   |                                                                       
TTTGAACCGGAAAGTTCGAGTGCAATGGGATTTGGATTTCGATGTGGATTTCTTGGCCTTTTGCACATGGAAATAGTACAGgt---aata-attggcgcattttcattct---tttcttaagttttcatgaaacgcttacag----------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814694|gb|BI786969.1|BI786969
EST:     TGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAG                         GAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGT
genomic: TGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatat ... tacattacagGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGT