Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGAACCTGCTCACATCAACAATCAAGATTGATGCTGAACAGTCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCATCAAAGAGTTATACATTGCAGgtactcattcaaaaaaatctagtgacacgtactttggcattttatcattactcctctgtctcctcactaaggccaaaataatgcag

Basic information

species Glycine max
transcript GLYMA04G37780.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37780.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM5G872204_T02 (Zea mays), 5'ss of exon 13
AGTGAACCTGCTCACATCAACAATCAAGATTGATGCTGAACAGTCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCATCAAAGAGTTATACATTGCAGgtactcattcaaaaaaatctagtgacacgtactttggcattttatcattactcctctgtctcctcactaaggccaaaata-atgcag
 || ||  || | ||||| || || ||  |||||||||| || |||||||| |||||||| ||||| |||||||||||  ||||||  || ||||||||||||       |  | ||  |  ||    ||  | | | || | ||||  ||| |  |   || | |  |   |    ||  || |||
TGTAAATTTGTTGACATCGACCATTAAAGTTGATGCTGAGCAATCAGATTTGAGGTTCTGTTTCAGAATTATTTCACCCACAAAGATCTACACATTGCAGgtat------agcacaagtttatggtctgtcatattgaatatgatcaagacttccatacttcatgaacatatctgctatttatacag

upper sequence: GLYMA04G37780.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G093670_T01 (Zea mays), 5'ss of exon 4
AGTGAACCTGCTCACATCAACAATCAAGATTGATGCTGAACAGTCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCATCAAAGAGTTATACATTGCAGgtactcattcaaaaaaatctagtgacacgtactttggca--ttttatcattactcctctgtctcctcactaaggccaaaata-atgcag
 || ||  |  | |||||||| || ||  ||||||||||||| |||||| | |||||||||||||| ||| |||||||  |||| |  || ||||||||||||| |   || |    | | |||     | | ||      | | || |  | | |  |    | | |  |   |    ||  ||||||
TGTAAATTTATTGACATCAACCATTAAAGTTGATGCTGAACAATCAGATCTGAGGTTCTGCTTCAGAATTTTTTCACCCACAAAAATCTACACATTGCAGgtacac---cacatgtttatggtgcagtctgccttattgattctgattaagatttcaatactccatgaacacatctgctatttatgcag

upper sequence: GLYMA04G37780.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv17s0000g00310.t01 (Vitis vinifera), 5'ss of exon 13
AGTGAACCTGCTCACATCAACAATCAAGATTGATGCTGAACAGTCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCATCAAAGAGTTATACATTGCAGgtactcattcaaaaa--aatctagtgacacgtactttggcattttatcattactcct--ctgtctcctcactaaggccaaaataatgcag---------------------------------------------------------------------------------------
 |||||| | || ||| ||||||| ||| ||||||| || ||||||||||| ||||||||||||||||| ||||||||| ||||||  ||||| ||||||||||  | |||||    |    |   | |   | || ||  ||   ||||   |     || |      |  |||  ||  || || |||                                                                                       
TGTGAACTTACTGACAGCAACAATAAAGCTTGATGCAGATCAGTCAGATTTGAGGTTCTGCTTCAGGATCATTTCACCAACAAAGAACTATACTTTGCAGgtacaaaatcaaaggttagatcaaaaatataaatttgggttttcattcatgtttttagactatacttatatgaagctcagcattat-cagcccaaatacttgtccagtactaatgctggggattatgtcagtacctagagcagattctctcaactttatattaacacttgaatgcag