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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAGGATGCTGTTGTGCTTGCATTAGCCCAACACAGACGGCCAAATTCGGTTCGACAATCCGTTTTAGgtatttaatttaacatgtatctttttcaatgttagttttctacttcttttaatcaatttggttactcacaattctctcattttatcggtgacttctgtct...

Basic information

species Glycine max
transcript GLYMA04G37710.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37710.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv17s0000g00390.t01 (Vitis vinifera), 5'ss of exon 13
GTTGAGGATGCTGTTGTGCTTGCATTAGCCCAACACAGACGGCCAAATTCGGTTCGACAATCCGTTTTAGgta--tttaatttaacatgtatctttttcaatgttagttttctacttcttttaatcaatttggttactcacaattctctcattttatcggtgacttctgtct
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GTTGAGGATGCCATTGTCCTTGCATTGGCCCTGCACAGACGTCCAAATTTGGTTCGACAGTACAGCTCAGgtaggccttatttctcatttctaatggttgaatttgcatttccttttgcactaataa--ttgatttgatgggatcaattcattttccatttgtcttctaaga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23064600|gb|BU579373.1|BU579373
EST:     TGCATTAGCCCAACACAGACGGCCAAATTCGGTTCGACAATCCGTTTTAG                         ATTCCAAATCACGTGGTGAT
genomic: TGCATTAGCCCAACACAGACGGCCAAATTCGGTTCGACAATCCGTTTTAGgtatttaatt ... ttattttcagATTCCAAATCACGTGGTGAT