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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCCGGAGCATGATGGAGGTTATAACTTCAATCCTTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttcaagacgtattttatattcttgaggttgagtgtatattttatcctcttctaaggaaagctggccatatttacgattgtag

Basic information

species Glycine max
transcript GLYMA04G37370.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37370.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 13
ATACCCGGAGCATGATGGAGGTTATAACTTCAATCCTTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttcaagacgtattttatattcttgaggttgagtgtatattttatcctctt-ctaaggaaagctggccatatttacgattgtag-------
||||||||||  |||  || || ||||||||||||||||||||| | |||||||| |||||||  |||||| | || ||||||||||||| | | || |    ||||   ||  | || |||  | | || ||| ||||  | |  |  ||   |     |||  | |  |  |        
ATACCCGGAGTTTGACAGATGTCATAACTTCAATCCTTCAGAGAGTGGGTGATGACATCGATCGCAACAACCTGCCGCAAATTCTGgtacgtgttaaaatccttttt---tttgtcagtttggttttttagtttctccttatgcctacaaacattaattctatcaatggctacattctatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933109|gb|BU550248.1|BU550248
EST:     TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTG                         TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
genomic: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttca ... acgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
EST: gi|192327947|gb|FK022478.1|FK022478
EST:     TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTG                         TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
genomic: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttca ... acgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
EST: gi|26269205|gb|CA820268.1|CA820268
EST:     TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTG                         TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
genomic: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttca ... acgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
EST: gi|21995020|gb|BQ786548.1|BQ786548
EST:     ATCGATCCTAACAACATACCCCAAATTCTG                         TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
genomic: ATCGATCCTAACAACATACCCCAAATTCTGgtacttttca ... acgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
EST: gi|20812907|gb|BQ297385.1|BQ297385
EST:     TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTG                         TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
genomic: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttca ... acgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
EST: gi|51341763|gb|CO983080.1|CO983080
EST:     TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTG                         TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
genomic: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttca ... acgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
EST: gi|33390686|gb|CA853881.1|CA853881
EST:     TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTG                         TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
genomic: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttca ... acgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
EST: gi|5678159|gb|AI939289.1|AI939289
EST:     TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTG                         TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
genomic: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttca ... acgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT