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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACAGCTTTGACAGTCACAACAATTGGATTTCTTAAGGAAGCTCCTCAAGTCAATATCCATGGTTTCAATGTATATCACAAAAATCGGCTTATACTGgtaatttttgcccaaaatcttctaatattcctagttgaaggcagttttactttattaatgcttgtgattgattaattgataaattcttgtgaaaattcta...

Basic information

species Glycine max
transcript GLYMA04G35870.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G35870.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv17s0000g08750.t01 (Vitis vinifera), 5'ss of exon 12
GGAACAGCTTTGACAGTCACAACAATTGGATTTCTTAAGGAAGCTCCTCAAGTCAATATCCATGGTTTCAATGTATATCACAAAAATCGGCTTATACTGgtaa----tttttgcccaaaatcttctaatattcctagttgaaggcagttttactt-tattaatgcttgtgattgat-taattgataaattcttgtgaaaattcta
      | |      || || || || || |||||||| |||||||| ||||| ||||||||||| |||||||| || || || || || || ||||||||||    |||||    || || || |||| |  |   |||||  | |||| |  | |   | |   | | |   || || || | |  || ||   |  ||    
------GGTACAGTTGTAACTACCATAGGGTTTCTTAAAGAAGCTCCACAAGTGAATATCCATGGCTTCAATGTCTACCATAAGAACCGTCTAATACTGgtaaatattttttatgtaatatattttaatttggcagtttgaa--ctgtttgatatgtcacattatatatcaagaatatattttaaatgttttttatatgat----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7691426|gb|AW759554.1|AW759554
EST:     AAGTCAATATCCATGGTTTCAATGTATATCACAAAAATCGGCTTATACTG                         CCATTTTGGCAGGTTGTAAGCTATTTGGACAGTANGGGAAGAGGAGTTGTT
genomic: AAGTCAATATCCATGGTTTCAATGTATATCACAAAAATCGGCTTATACTGgtaatttttg ... aatatgccagCCATTTTGGCAGGTTGTAAGCTATTTGGACAGTAGGGGAAGAGGAGTTGTT
EST: gi|21256821|gb|BQ453709.1|BQ453709
EST:     AAGTCAATATCCATGGTTTCAATGTATATCACAAAAATCGGCTTATACTG                         CCATTTTGGCAGGTTGTAAGCTATTTGGACAGTAGGGGAAGAGGAGTTGTT
genomic: AAGTCAATATCCATGGTTTCAATGTATATCACAAAAATCGGCTTATACTGgtaatttttg ... aatatgccagCCATTTTGGCAGGTTGTAAGCTATTTGGACAGTAGGGGAAGAGGAGTTGTT
EST: gi|9203797|gb|BE330021.1|BE330021
EST:     AAGTCAATATCCATGGTTTCAATGTATATCACAAAAATCGGCTTATACTG                         CCATTTTGGCAGGTTGTAAGCTATTTGGACAGTAGGGGAAGAGGAGTTGTT
genomic: AAGTCAATATCCATGGTTTCAATGTATATCACAAAAATCGGCTTATACTGgtaatttttg ... aatatgccagCCATTTTGGCAGGTTGTAAGCTATTTGGACAGTAGGGGAAGAGGAGTTGTT